Gene Ssed_0236 details

Gene Information

• Locus tag: Ssed_0236
• ID: 5614068
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella sediminis HAW-EB3
• Kingdom: Bacteria
• Replicon accession: NC_009831
• Strand: +
• Start bp: 270603
• End bp: 271346
• Gene Length: 744 bp
• Protein Length: 247 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640931062
• Product: hypothetical protein
• Protein accession: YP_001471977
• Protein GI: 157373377

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 47
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAGTACT TGCGTAATGT GATAGCGCTG AGTTTGCTTG CGGCTGCGCC GGCCTCACAG 
GCTGGAATGC TGGCGGTTGA AGCGGGAGTG ATGGACTGGA GCCAACAGGC TGAAGATTAT 
TTTGGTGAGG GCAAGAGCGA GAACAGCTTT ATACAGATGA AAGGCGCCAC GGGAAGTGCA 
TTTGGCGACC TGTATGCACA CGTGAAGCTG GAAGATATCG AAGATTCCGC GGCTATAGGA 
TCTGAGATCA ATATCGTCGG TCAGATCAAT ATGGGAGACA GTGATTTTAA TTGGTATGGC 
CAGGTATTCA ATAAGCAGAA ACCCGTCTGG TCCGAGACCA ATACCACCTT AGGAGTGAGC 
TGGGACAAGC AGTTCGATAA CGGTTTGTAT GCTCAGCTGG CGCTGGCAGG CCACATAGTC 
ACTGCGGACT ATAAGCACTT CAACTCCGAC TTCAAGGGGG GATTCAACGG GGGGTATTTT 
ATCTACACCC TGATGAAGGA CTTCGATATC GGTGATCAGA ATTTTTCCTT TGTCTGGTGG 
CAGGAGCACT TTTTTGGCCG GGATGACCTC TATTTGAAGC TCTCCGGTGA TGGCAAAGAT 
TTTGGTTTTA ATGGTTCGGC TATCTTGCGT TGGCATTTTC ATGAGCAGAT CTCCGCAGCC 
CTGACCTACC GCTATGCAGA AAACAATATG GGGAAAGAGG GTTTTCATGA CGGCGTGTTC 
TATTCATTGC AATACAACTT TTAA 

 

Protein sequence

MKYLRNVIAL SLLAAAPASQ AGMLAVEAGV MDWSQQAEDY FGEGKSENSF IQMKGATGSA 
FGDLYAHVKL EDIEDSAAIG SEINIVGQIN MGDSDFNWYG QVFNKQKPVW SETNTTLGVS 
WDKQFDNGLY AQLALAGHIV TADYKHFNSD FKGGFNGGYF IYTLMKDFDI GDQNFSFVWW 
QEHFFGRDDL YLKLSGDGKD FGFNGSAILR WHFHEQISAA LTYRYAENNM GKEGFHDGVF 
YSLQYNF