| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0229 |
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| Symbol | |
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| ID | 5613470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 263789 |
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| End bp | 266305 |
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| Gene Length | 2517 bp |
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| Protein Length | 838 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931055 |
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| Product | anaerobic dimethyl sulfoxide reductase subunit A |
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| Protein accession | YP_001471970 |
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| Protein GI | 157373370 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR00509] molybdopterin guanine dinucleotide-containing S/N-oxide reductases
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR02166] anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACGCA GAAGTTTCTT AAAAATGAGT GCAGCCATGG GTTGTGCAGC AAGCGTAACA
GGTTGTAAAA CCAGTTCAGA TGATGCCAAT GTTGTACCAC CACAGCCACC TGTCGGTGAA
GAGCAAATAA CCTGGTCATC TTGTCTGGTT AACTGTGGCT CTAACTGCCC GGTTAAAGTG
TTTAGCCGTG ATGGTGTTAT TACACGCGTT GAAACCGATC ACGACGTTGC CGATGGCGAT
GATGTTTACC AAGTGCGCGC CTGTGCCCGT GGTCGTTCAC TACGCCAGCG CACCTATGCC
GTCGATCGCT TAAAAACACC GATGAAGCGT GTTGGTAAGC GTGGTGAAGG TAAGTTTGTG
CCTATCAGCT GGGATGAAGC GGCAAAAACT ATCGGTACTA AGCTAACGTC TGTGATTGCC
GAGCATGGCA ACAAGGCTAT CTTCCGTAGC TATGGCTCTG GGGCTTACTA TGGTTTCGCT
TCTAACGCCT GTTTTAACCG TCTGTTTAAC TTAAACGGTG GCTGCCTGAA TGCCTATGGT
AACTACTCTT GGGCACAGCA GATGGAAGCG GCTAAGCATA CCTTCGGTAC CGGTAGTACT
TCGGGGTCAT CGACGGTGAC TCTGGCAAAC AGTGACTTCC TGTTGGGTGT GGCTTATAAC
CCAAGCGAAA TTCGTCAGTC GGGTTCGGGT GAAGGTTATG ACTACCTGAA GGCACTGCAA
AAGAGCAACG GCCTGAAAGT CGTGATGATC GATCCTCGCT ACACTGACTC TATGTTAGGT
AAAGAGTCTA AGTGGTTGCC TATCCGCCCG GGTACCGATG CGGCCTTTGC TGAAGCCATC
GCTTATCAGA TGATCAGCTC TGGTTGGGTC GACCAGAACT CACTCAGCTT TATCAACAAG
TATGCCGTAG GTTTCGACGC TGCCTCTATT ACTGCGCAAA AAGAACTTTT TGCAAATAGC
GGCGATGCCA CCAAGCAAGA ATACGCTAAG GTGATGAAGC CGGAGGAAAA CTACCGTGAT
TACATCTTAA GCCAGGGCGT CTACGCCGAT CAGCCGTTGA AGACGTCTGA GTGGGCCGAA
AAAATTACCG GTATTCCGGC TGCGCAGCTT GAGCAAATTG CGACCGACCT ACAAAATGCT
AAAGCCCCCT ATATCGTCGT TGGCGCCGGT GTTAACCGTC AGGCCAATGG TGAACAAAGC
ATGCGCGCGC TTTACATGCT ATCTGTATTG ACGGGTAAGT TGGGTACCTT AGGTGCATCG
AACGGTGAAC TGCCATCCAT GAGCGGAATG TACCGCGCCG GTATTCCAAC GGGTAGCAAC
CCGGTTAAAG AAAGCATCTC ATTCTTTACC TGGTCTGAAG CTATTCATAA CGGCGAAACC
ATGACTGCAC GCAGCCACGG CGTTCGTGGT ACCGACGGTT TGGACACGCC ACTGGGCACC
AATATCAAGG TCATCATCTC TGCGTCAGAC AGCTCGCTGC TGAACCAACA TGCCGAGATC
AACAACACCG CTAAGATCTT AGAAGATGAA ACGGGTGTTG AGCTGATTGT CAGCTGTGAT
TGCTGGATGA CTCCAGGGGC TAAGTTTGCC GATATCATCT TGCCCGATAC CAGCTGGTTA
GAATCAAATG ACTTAGTTAA CGACAGCTAT GCCTCCGGTG CACTGGGTTA CATCACGGCG
ATGAAGTCGG CGATTGAACC TATGTGGGAC TGTAAGTCTA TGTATGAAGC ATCAGCACTG
ATTGCTAAGT ACATGGGTTG TGAAGCTGAA TTCACCGAAG GTAAAACTGA AGAGCAGTGG
CTCGAAGAGT TATACCAGAA GACCAAAGAC AGCAGCACTA ACTTAGGCGT CGTGCCAGCC
TTCCCGGCGA CTTACAAAGA AGCACAAGAG ATTGGCTTCT TCCGTAAAAA CATGAACGAC
AACCATGTTG CGCTTAAAAG TTATATCAAT GGCGGTAAAG CACTGTCGAC CCCAAGTGGC
AAGATTGAGA TCTACTCTGC CGAGCTTGCA TGGCGAGCAG CTAACTGGGA TCAAGAGCTT
ACGACTGACG TTAAGGGTGA CACCATCACA GCAATTCCTC AGTACACAGT GACTTGGGAT
GGTTATGAAG ATGAAGACAC CAGCACTGAT TACCCAATTC AGTTAGCGGG TTACCACACC
AAGGGTCGTA CTCACTCAAG CTATCACAAC GTGCCTTGGC TTCGTGAAGC GGTTGAAGAT
GCGGTTTGGG TGAACCCAAT GGATGCTGCA GAGAACGGTC TGAGCGCTGG CGATAAGATT
GAGATGTATA ACGAACGTGG CTCGATTGCC GTTAAGGTGC GTATCACTCC ACGTGTCGCA
CCTGGTGTGT TTGCGTTGGG TCAGGGTGCC TGGTTTAAGC CAGGTAACAC TGTTGGCAGC
ACGGGTCACA TCATAGATGA AGGCGGCGCG ATCAATACGC TAACCCGCTA TCAGCCAAGC
CCTGTCGCTA AAGGCAACCC ACAGCACACT AACCGTGTTG CAATTAAAAA GATTTAA
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| Protein sequence | MERRSFLKMS AAMGCAASVT GCKTSSDDAN VVPPQPPVGE EQITWSSCLV NCGSNCPVKV
FSRDGVITRV ETDHDVADGD DVYQVRACAR GRSLRQRTYA VDRLKTPMKR VGKRGEGKFV
PISWDEAAKT IGTKLTSVIA EHGNKAIFRS YGSGAYYGFA SNACFNRLFN LNGGCLNAYG
NYSWAQQMEA AKHTFGTGST SGSSTVTLAN SDFLLGVAYN PSEIRQSGSG EGYDYLKALQ
KSNGLKVVMI DPRYTDSMLG KESKWLPIRP GTDAAFAEAI AYQMISSGWV DQNSLSFINK
YAVGFDAASI TAQKELFANS GDATKQEYAK VMKPEENYRD YILSQGVYAD QPLKTSEWAE
KITGIPAAQL EQIATDLQNA KAPYIVVGAG VNRQANGEQS MRALYMLSVL TGKLGTLGAS
NGELPSMSGM YRAGIPTGSN PVKESISFFT WSEAIHNGET MTARSHGVRG TDGLDTPLGT
NIKVIISASD SSLLNQHAEI NNTAKILEDE TGVELIVSCD CWMTPGAKFA DIILPDTSWL
ESNDLVNDSY ASGALGYITA MKSAIEPMWD CKSMYEASAL IAKYMGCEAE FTEGKTEEQW
LEELYQKTKD SSTNLGVVPA FPATYKEAQE IGFFRKNMND NHVALKSYIN GGKALSTPSG
KIEIYSAELA WRAANWDQEL TTDVKGDTIT AIPQYTVTWD GYEDEDTSTD YPIQLAGYHT
KGRTHSSYHN VPWLREAVED AVWVNPMDAA ENGLSAGDKI EMYNERGSIA VKVRITPRVA
PGVFALGQGA WFKPGNTVGS TGHIIDEGGA INTLTRYQPS PVAKGNPQHT NRVAIKKI
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