| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0228 |
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| Symbol | |
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| ID | 5613469 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 261745 |
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| End bp | 263754 |
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| Gene Length | 2010 bp |
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| Protein Length | 669 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931054 |
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| Product | outer membrane protein |
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| Protein accession | YP_001471969 |
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| Protein GI | 157373369 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03509] decaheme-associated outer membrane protein, MtrB/PioB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGATTTA AACTCAATAT CATCACGGTG TCGCTCCTGG CTGTTTCTGG CTCGGCGATG
GCTACAAACT TCGGTGTCGG TAACGCCAAT ACTGACTCGA TCAATATGGA TAAGTACCAG
TGCAAACGTT GTGTCTCGAC CAATGGATAT ATTGGTGAGG TCTCAGTCTC GGCGGGTTAC
AACTCAGTGG ACGATATCCA TGCGGGGAAC GCGCTGGGAA GTGCCGAAGA TGGCGCCATC
GCCGCCGTGA GTGGTGATAT CCGTTATCAA AATGAGACCG GGTACCGGGC ACAAATTCAA
GCTCACCAGT TGGGCATGGA TAATGGCTTT GCCAATATCA AGGTGGGAAA GTCTGGCCTC
TACGAGCTGG AGCTGGATTA TCAATCGCTT AAGAGTTATC AGGCGGGCGA TGTGCAGAGT
CAGCTTTGGC ATGACGATGG GATGTTAACC CCCAGCAGCT ACACCAATGA GTTTGATCTG
GCGCTAAAGC GCGAGAAGTC GGCGATAGGC TTCAATTATG GAGAGGGGTT TTATAACACC
TTCATCCGCT ATAGTCAGGA AGAGAAAACG GGTCATCAAT CGAGCAGCCT GGTCGCGCCA
AGTCCGGTCA ACTTCGGTTT GCCTGTCGAT GCTACCACTA AGCAGCTCGA TGCAGGCGCA
TCGTTAGCCG GCGATAACTG GTTAACTGAG TTGAGCTATT TCGGTAGTTA TTACGGCAAT
AACATCAAAG ACCTGAGCCT GCCTCATATG AATGATGTCT ATTCTGCAAC GCCGGATAAT
GAGGCTCATC AGGTGTCACT CTCGGGTCAG TACCAGTTTA ATCGTACCGT GATGAGTGGC
CGTCTCGTGA CGGGACGAAT GATCCAGGAT GACGCGCTTA TCCAGATGAG TGGTAATCCG
CTGCAAAGCT GGGATGGGCA GATAGATACC TTAGATGGTC GTTTTGCGGT GACCTCCATG
TTGAGCAATC GCCTGCGTTT AGGTGGTAGC GTCGATTACA GCAAACGCGA TAACAAGAGC
TCTGTGTGGG AATTTACCCA GTACAGTTAC AACGGCTTAA GCGGCTCATT TAAGCAAAAT
GTGCCCCAGG ATATCGAGCG CAACACCTAT AAGGTCAATG CCAGTTACCG CATTGCCAGT
GGTTACCGTC TGCAAGCCGG TTATGACAGG AAAGAGGTCG ACCGTAGCTA TAGCGAACGT
GAGCAGACCA ATGAAGATAG CCTGTGGGCC AAATTTAATG TGAGTGCCTT CGACACGTTC
AAGGTCAATC TTAAAGCCAG CCACGGCAAT CGAGGTGGTT CGGATTATGA AGTTGACGAG
GTCACCTCTT CACAAGAGAA CGCCTTGATG CGCAAGTACT ATCTTGCGGA TCGTAAACGT
AATGCCGTTG AGCTTAAGGT TAATCACTCG CCTCTGTCCT GGATGAGTAT CGATGTTACC
GGGCGTTATG CCAAAGACGA CTATGACGCC ACCGAGATAG GCCTGACAGA ATCGGAAGAC
TTCGGCTATG ACGTCAATCT GAGCCTGCAG TTCAGTAAGC ATCTGTCGGC CTACGGTTTT
GCTGGTCAGC AGTGGATTAA CTCGGCACAA GCCGGTAGCC AGAGTTTCAG TAGCCCGGAC
TGGAACGCCG ATATCGAAGA TGAGTTTATC AATATCGGTG CCGGTTTTAG CTATGGCGGT
CTGATGCAGG ACAAACTCAC CTTAGGCGGT GATTACCTGT TCAGTAATTC AATCAGTGAC
ACCTCGGTCG GGGGGACCCT GGTTACGACC AATGGTAGCC AGCCATACGG TGATTACTTC
TCCTATAACC ACAGCGTGCG TATGTATGCC GATTATGCCT TGAGCAAACA GATGGCATTG
AAGCTGAGTT ATCAATATGA ACGTTATTAC GACACAGATG CGGCTCAAGT CGCGACGAAT
GCTGTGCCGG GGCTAACCAC GTTAGGTGAG CTTAACCATG ACTATAACGC GCACGAAGTG
ATGTTGTCGT TTAGCTATTT GTTGCGCTAA
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| Protein sequence | MGFKLNIITV SLLAVSGSAM ATNFGVGNAN TDSINMDKYQ CKRCVSTNGY IGEVSVSAGY
NSVDDIHAGN ALGSAEDGAI AAVSGDIRYQ NETGYRAQIQ AHQLGMDNGF ANIKVGKSGL
YELELDYQSL KSYQAGDVQS QLWHDDGMLT PSSYTNEFDL ALKREKSAIG FNYGEGFYNT
FIRYSQEEKT GHQSSSLVAP SPVNFGLPVD ATTKQLDAGA SLAGDNWLTE LSYFGSYYGN
NIKDLSLPHM NDVYSATPDN EAHQVSLSGQ YQFNRTVMSG RLVTGRMIQD DALIQMSGNP
LQSWDGQIDT LDGRFAVTSM LSNRLRLGGS VDYSKRDNKS SVWEFTQYSY NGLSGSFKQN
VPQDIERNTY KVNASYRIAS GYRLQAGYDR KEVDRSYSER EQTNEDSLWA KFNVSAFDTF
KVNLKASHGN RGGSDYEVDE VTSSQENALM RKYYLADRKR NAVELKVNHS PLSWMSIDVT
GRYAKDDYDA TEIGLTESED FGYDVNLSLQ FSKHLSAYGF AGQQWINSAQ AGSQSFSSPD
WNADIEDEFI NIGAGFSYGG LMQDKLTLGG DYLFSNSISD TSVGGTLVTT NGSQPYGDYF
SYNHSVRMYA DYALSKQMAL KLSYQYERYY DTDAAQVATN AVPGLTTLGE LNHDYNAHEV
MLSFSYLLR
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