| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0222 |
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| Symbol | |
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| ID | 5613863 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 253663 |
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| End bp | 254520 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931048 |
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| Product | RNA polymerase factor sigma-32 |
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| Protein accession | YP_001471963 |
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| Protein GI | 157373363 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.281933 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTAATC AAACGCAATC AATGGCACTG ACTGTTCCCC ACGGAAGCGG TAGCCTGGAA
GCTTATGTTC ACTCGGCCCA CAACATCTCG ATGTTGCAGC CAGAGCAAGA GTATGAGTTA
GCCAAGCGTT TGCAAGAAAC GGGAGACCTA CAGGCTGCGA AGCAGCTGAT TATGTCTCAC
CTGCGTTTTG TCGTGCACGT TGCTAAAGGG TATTCCGGTT ACGGCTTACC ACAAGCGGAC
CTTATCCAGG AAGGCAATAT TGGTTTGATG AAGGCCGTAA AACGCTTCGA TCCCAATGTC
GGTGTCCGCC TTGTCTCTTT TGCTGTTCAC TGGATTAAAG CTGAAATTCA TGAATATGTG
CTTAAAAACT GGCGCATAGT CAAAGTCGCT ACCACTAAAG CGCAACGTAA ACTCTTTTTT
AACCTGCGTA AATCTAAAAA ACGTCTGGGT TGGTTCAGCG ATGAAGAGGT CGGTATGGTT
GCCGATAATC TGGGTGTTTC TAAAGCCGAT GTGACCGAAA TGGAGTCACG CATGGCAGCT
CAGGATCCCG CTTTCGATCT TGCCAGTGAT AACGATGACG ATCACGATTT TGCGCCTATG
CATTATCTGG AAGATCATTC GTCGGATTTA GCATCTCAAG TTGAAAATGA TAATTTAGAA
GCGAGTAATC AGGCCCGCCT TCTGTCCGCT ATCAAGACGT TGGATGAGCG TAGTCAGCAT
ATTCTGCAGG CGCGTTGGTT AAATGAAGAT AAGACGACAC TGCAAGAGCT TGCTGCAACT
TACCAGGTAT CAGCCGAGCG AATCAGGCAG CTGGAAAAGA ATGCCATGAA TAAGCTGAAA
GGCCGAATGG AAGCCTAA
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| Protein sequence | MTNQTQSMAL TVPHGSGSLE AYVHSAHNIS MLQPEQEYEL AKRLQETGDL QAAKQLIMSH
LRFVVHVAKG YSGYGLPQAD LIQEGNIGLM KAVKRFDPNV GVRLVSFAVH WIKAEIHEYV
LKNWRIVKVA TTKAQRKLFF NLRKSKKRLG WFSDEEVGMV ADNLGVSKAD VTEMESRMAA
QDPAFDLASD NDDDHDFAPM HYLEDHSSDL ASQVENDNLE ASNQARLLSA IKTLDERSQH
ILQARWLNED KTTLQELAAT YQVSAERIRQ LEKNAMNKLK GRMEA
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