| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0216 |
|---|
| Symbol | |
|---|
| ID | 5613927 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 247524 |
|---|
| End bp | 248087 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640931042 |
|---|
| Product | tetraheme cytochrome c |
|---|
| Protein accession | YP_001471957 |
|---|
| Protein GI | 157373357 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTTGC GTGCACTATT TAGACCAAGC GCGAAATACT CAATATTTGC CCTACTAGTG
GTTGGTATTG TAGTCGGTGT TGTTGGCTAC TTTGCTACAC AACAAACTTT ACACGCGACA
AGCTCTGATG AGTTTTGTAT GACTTGTCAC AGCAACCATT CTCTTAAGGA TGAAGTACTG
GCGTCAGCAC ACGGTGGCGG TAAGTCAGGT ATCGTTGTTG AATGTCAGCA GTGTCACCTT
CCGCAAGAGC CTTTCCAGTA TCTTATTAAA AAGATCATCG TATCTAAAGA TGTTATCGGC
TTCTTAACGA TTGATGGTTT CAACACTCAA GAGTGGTTAG AAGCAAACCG TAAAGAACAG
GCCGATCACG CTCGTGATTT CCTACGTTCT ATCGATTCTT CTACTTGTCA GAACTGTCAC
AAGCGTATCT ACGAAGATCA GCCTGAGACT ATGAAGAAGA TGGCTAAGAG AATGCATAGC
AATAACTTCA AGAAAGCTGA AGACAAGAGA AAGACTTGTA TCGATTGTCA CAAAGGCGTT
GCTCACCCAT ACCCTAAGGG ATAA
|
|---|
| Protein sequence | MNLRALFRPS AKYSIFALLV VGIVVGVVGY FATQQTLHAT SSDEFCMTCH SNHSLKDEVL
ASAHGGGKSG IVVECQQCHL PQEPFQYLIK KIIVSKDVIG FLTIDGFNTQ EWLEANRKEQ
ADHARDFLRS IDSSTCQNCH KRIYEDQPET MKKMAKRMHS NNFKKAEDKR KTCIDCHKGV
AHPYPKG
|
|---|
| |