| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0211 |
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| Symbol | |
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| ID | 5612988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 242600 |
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| End bp | 244552 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931037 |
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| Product | membrane-fusion protein-like protein |
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| Protein accession | YP_001471952 |
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| Protein GI | 157373352 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCATT TAGAATCGAA CAATAAGCGC ACCAAATTAG CCTATCTGCT TAGCCTGTTT
ATGGTTATCA CCCCGCAGTT AGCCCATTCA CAACAGCTAT TAGCTCAGGA GAATACAGCC
CAGCATACAG AGCACAGTCA TACGGATGCA AAAACGGCAA CTTACTCCTG CCCCATGCAT
CCTGATGAGA CCAGTCATGA AGCCGGAAGC CGCTGCTCTA TCTGTAACAT GTTCCTCGTC
AATGAAGGAG TTGAGGAAGA GGAAGGCAGA GCCAAGACGA GCCTAAGTGC AAGCGAGCAG
AAAACCTATG TGTGCCCCAT GCATCCTGAT GAGACCAGTC ATGAAGCCGG AAGCCGCTGC
TCTATCTGTA ACATGTTCCT CGTCAATGAA GGAGTTGAGG AAGAGGAAGG CGGAGCCAAG
ACGAACCTAA GTGCAAGCGA GCAGAAAACC TATGTGTGCC CCATGCATCC TGATGAGACC
AGTCATGAAG CCGGAAGCCG CTGCTCTATC TGTAACATGT TCCTCGTCAA TGAAGGAGTT
GAGGAAGAGG AAGGCGGAGC CAAGACTAGC CTGACTGCCA ATGAGCAGAA AACCTATGTC
TGCCCTATGC ATCCGGACGA GACCAGTCAT GAGGCGGGAA GCCGCTGTCC GATATGTAAC
ATGTTCCTCG TCGAAGAGGA GGAAGAGGAG AAAGGGAGCG TCGATCACTC ATCTCATAAT
ATGAGTAGTT CTACCCCTGA AGACCACTCG GGTCACGCAC ATCAAACCCA AGAGGCAGAT
ACACCGGCAG ATACTGTCTT CAATAGTGCA AAACCAGCCC CTCTCGATGA TGGGGCAAAT
ATTAAGTATG TCTGTCCTAT GCATGCCCAT ATCATCAGCG ATGTACCAGG TACATGCCCT
ATCTGTGGTA TGAACCTGGA AAAAGTTGAG TTAGGAGGAA ACAGCAAGGA GATCCAGATA
GATGTTTCAG GCGGCATGCA ACAGGCATTA GCCCTTAAGG TTGCCAGAGT CGAAAAAGAT
ACCCTTTGGA AGTTTGTCCA AACCGTTGGT CAGATAGATT ATGACGAGAG CAAGATAAAT
CATATCCATG CACGTGTGAA TGGCTGGATA GAGAAGCTCA CCATTGAGTC TGTCGGTGAC
AAAATTATCA AGGGACAACT GCTATATGAG ATCTACTCTC CCGATCTGAT CAATGCCCAA
GATGATTTCC TGCTCGCACA AGATACCTTA AAGCGCTCAG GAAGCAGCGA GAACTATAAA
GACTTAGTGA GAAAAGCCGG TTTAAGATTA GAATTGCTCG GCTTTAACAA AAGCCAGATA
AAGGCTCTGG CCAAATCTAA GAAAACCCAA TATCGAGTCC CATTTTACGC TAAGAGTGGC
GGCATAGTTA AGGCACTATC TGTCAGAGAC GGCATGTATA TCCAACCATC GACGGAAGTG
ATGTCTGTCG TCGACCTGTC CAAGGTTTGG GTCATCGCCG ATGTGTTTGA GAATGAGCAG
AGCTGGCTTG AGATAGGCCA GAAAGCCGAA GTCTCTGTAC CAGCGATGGG TATCAAGGGA
ATTGAGGGGG AAATTGACTA TATCTATCCG GAACTCGATG CCGTTACCCG TAGCTTAAGA
GTCAGAATCG TAGTGAAAAA CAAGGATTTG GAACTGAGAC CTAATACGCT GGCTAAGATA
GACATATTTG GTGGTCCCAA CAGAGACACC TTAGTCATTC CACAAGAAGC TCTGATTCAG
ACGGGTAAAG AGAACCGCGT CATTGTTAAG CTCGAAGACA ATAGCTTTAC CGCCCGTAAG
GTGACAGTAG GCATGCTTAG TCAAGGCAAA GCCGAGATAA AAAATGGCCT TGAAGCGGGA
GAGCGCGTGG TGACTTCGGG TCAATTTCTT CTCGACTCCG AAGCCAGTCT CAAGGGTAGT
TTGATGCGCC TCAGCAGCGG CCACCAGCAT TAA
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| Protein sequence | MSHLESNNKR TKLAYLLSLF MVITPQLAHS QQLLAQENTA QHTEHSHTDA KTATYSCPMH
PDETSHEAGS RCSICNMFLV NEGVEEEEGR AKTSLSASEQ KTYVCPMHPD ETSHEAGSRC
SICNMFLVNE GVEEEEGGAK TNLSASEQKT YVCPMHPDET SHEAGSRCSI CNMFLVNEGV
EEEEGGAKTS LTANEQKTYV CPMHPDETSH EAGSRCPICN MFLVEEEEEE KGSVDHSSHN
MSSSTPEDHS GHAHQTQEAD TPADTVFNSA KPAPLDDGAN IKYVCPMHAH IISDVPGTCP
ICGMNLEKVE LGGNSKEIQI DVSGGMQQAL ALKVARVEKD TLWKFVQTVG QIDYDESKIN
HIHARVNGWI EKLTIESVGD KIIKGQLLYE IYSPDLINAQ DDFLLAQDTL KRSGSSENYK
DLVRKAGLRL ELLGFNKSQI KALAKSKKTQ YRVPFYAKSG GIVKALSVRD GMYIQPSTEV
MSVVDLSKVW VIADVFENEQ SWLEIGQKAE VSVPAMGIKG IEGEIDYIYP ELDAVTRSLR
VRIVVKNKDL ELRPNTLAKI DIFGGPNRDT LVIPQEALIQ TGKENRVIVK LEDNSFTARK
VTVGMLSQGK AEIKNGLEAG ERVVTSGQFL LDSEASLKGS LMRLSSGHQH
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