| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0210 |
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| Symbol | |
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| ID | 5612987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 239331 |
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| End bp | 242468 |
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| Gene Length | 3138 bp |
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| Protein Length | 1045 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931036 |
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| Product | CzcA family heavy metal efflux protein |
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| Protein accession | YP_001471951 |
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| Protein GI | 157373351 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTAAGA AAATTATCGA GGCCTCAATC AAGCAACGCC TCATGGTATT GATCATCACC
ATCATGATCA CGGTATGGGG CGTTCAAGAG CTGAGAAATA CCCCGTTAGA TGCCCTTCCG
GATCTTTCCG ATGTGCAGGT GATCATTAAA ACCCCATTCC CCGGACAGGC ACCAAAACTT
GTCGAGGAGC AGGTGACTTA CCCGTTATCC ACGGCCATGC TCGCTGTACC CGGCGCCAAG
ACAGTTCGAG GCTACTCTTT CTTCGGTGAC TCCTATGTGT ATGTCATTTT TGAAGATGGT
ACCGATATCT ATTGGGCAAG ATCCCGGGTT CTGGAATACC TCAATCAGGT CAGCAGCCGC
TTACCTCAAG GTATCCAACC CTCTCTGGGA CCGGATGCTT CCGGAGTTGG CTGGATATTC
GAGTACGCCT TAGTGGACAG ATCCGGTAAT TTAGATCTGT CTCAACTGAA AAGCCTACAA
GATTGGTATC TGAAACTGGA GCTCCAAAGT GTCGCTGGAG TCTCCGAAGT CGCCACCGTC
GGCGGTATGG AGCAGACCTA TCAGATAGTG ATCGAACCCG ATAAGTTGGC CATCTATAAG
TTGGATATCG CCTCGATTAA GAATGCGATA GCTAAGTCGA ATACCGAAGC CGGTGGTTCG
GTTATCGAGA TGGCCGAAGC CGAATACATG GTGCGAGCCA AAGGCTATCG ACAGACATTA
GATGATTTCA GAGAGATCCC TCTGGGAATA ACGAGCCCCT CCGGTACCCC TCTGCTGCTT
AAAGATGTGG CTACCATTCG AAAAGGCCCC GCGTCTCGCC GAGGTATTGC CGAGCTCGAC
GGTGAAGGAG AGGTGGTCGG TGGCATTATC ATCATGCGTT ATGGCGAGAA TGCATTAGCC
ACAATCGAAG CGGTAAAAGA TAAGCTGGAA CAGCTTAAGG CCGGTCTCCC GGAAGGGGTT
GAGATCATCC CAACCTACGA CAGATCTCAA CTGATCGAAA GTTCGGTCGA AAATCTACTC
CATAAGGTCG TAGAGGAGAT GTTTGTGGTC GGTCTGGTGT GTCTGCTTTT CTTGCTGCAT
GCTCGCTCGA CACTCGTTGC CGTGATCACC TTGCCTTTGG CTATTCTCAT CGCCTTTATC
GTGATGAACA AGATGGGGGT GAATGCCAAT ATTATGAGCC TCGGCGGCAT TGCAATTGCT
ATCGGGGCGG TGGTCGATGG CGCCATCGTC ATGATCGAGA ATATGCATAA ACATCTCGAG
CATTTTAAAG AGAAATATCA ACGGCCACCT AACAATAAGG AGCACTGGAA GATAGTCACA
GAGGCGTCCA TCGAGGTCGG TCCTGCGCTG TTCTTTTCAC TGCTGATTAT TACGTTAAGC
TTCGTGCCCG TCTTTGCACT CGAAGCCCAA GAGGGTCGGT TATTCAGCCC CTTAGCCTAT
ACCAAGACCT TTGCGATGGC TGCGGCGGCC CTGCTTTCGA TAACCTTAGT GCCCATTCTG
ATGGGTTTCT TCATTCGAGG TAAGATCCCC AAGGAGACCA GTAATCCAAT CAGTCGGGTG
TTGATCGCAA TTTACAAGCC CTCACTGACA CTGGTGTTAA GATTTCCTAA GATCACACTC
GTTATCGCCG TCATTACCCT ACTCAGCGCC TGGTATCCTC TGAATAACTT AGGCAGTGAA
TTTATGCCTG AGCTTGAAGA GGGCGATCTA CTCTATATGC CTACCGCTCT GCCGGGGATC
AGTGCCAGTA AGGCCGCGGA GATATTGCAA CAAACCGATC GACTGATTAA AACCGTGCCT
GAGGTCAAGC GGGTATTTGG TAAAGTCGGC AGGGCCGAAA CGGCCACCGA TCCTGCACCA
TTAACTATGC TTGAAACCAC CATCATGTTG AATCCAAGAG ATGAGTGGAG AGAAGGCGTC
GCGCTTCAAG ATATTATCGA CCAACTGCAG CAGACGGTAA AAGTTCCCGG CCTGACTAAC
GCCTGGGTTC AACCCATCAA AACCCGCATA GATATGCTCT CTACCGGTAT CAAGACGCCG
GTAGGCATTA AGATAACGGG GGCCGATGTC GATGAACTGC AGAAAATTGG TACCAATATC
GAAGCCATCC TCAGCAAGCT GCCGAATACT AAATCAGCCT ATGCCGAACG CGTCGGTGGT
GGCCGATACA TAGATATTAC GCCTAAACTC GATGTTGCTT CCCGCTACGA CATGACCCTC
ACCGACATAC AGGATGTGGT TCGTTACGCC ATCGGCGGTA TGGAGATAGG TGAATCGGTA
CAGGGCGCGG AGCGATATCC AATTAACCTT CGCTACCCCA GAGAGCTCAG GGATAATATC
GAGAAACTCA GGGAGCTTCC CGTGATCACC AAAACGGGTC ATTACCTGCC GCTGCGTAAC
TTAGCCGATA TCGAGATCAC CGATGGGGCA CCTATGCTCA AGAGTGAAAA TGGTCGCCTG
ATATCCTGGG TGTTTGTCGA TATTGAGGGC ACCTCAATTG GCGAATATAT CGATGAGGCA
AAGCAGGCAC TGGATAACGT GCTCACTATA CCTCCCAGAT ATAGCTATGG TTTCGCAGGT
CAGTATGAGT ATATGCAACG CGTCGATGCC AAACTGAAGA AAGTGATACC TATGGCACTC
GGGGTTATCT TCATTCTGCT TATGATGACC TTCGGCTCGA CACTACAGGC GGGGATTATC
ATGCTCAGCC TGCCGTTTGC CTTGGTTGGT AGCACCTGGT TACTCTATGC CTTGGAATAC
AACATGTCAG TTGCCGTCGC CGTCGGTATG ATCGCACTGG CGGGGGTTGC AGCCGAATTC
GGAGTGGTGA TGTTGGTCTA CCTGAATAAC GCCATCAAGC ATAGAAAGGA GACCGGCGGC
TATGAATCTG TCACGGATCT CAAGGAAGCC TTAATCGAAG GCGCAGTTAT GCGTATTCGC
CCTAAGGCCA TGACAGTCGC GACCATCTTC TTCGGACTCC TACCCATCAT GTGGGGATCG
GGAGCGGGCA ATGATGTGAT GCAGAAGATT GCCGCACCTA TGATAGGAGG AATGGTCACA
GCGCCCTTGT TATCTCTTTT CGTGTTGCCG GCACTCTACC TGATCATCTA TGGCAGAAAG
TTAAACTCGA CGCAGTAA
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| Protein sequence | MLKKIIEASI KQRLMVLIIT IMITVWGVQE LRNTPLDALP DLSDVQVIIK TPFPGQAPKL
VEEQVTYPLS TAMLAVPGAK TVRGYSFFGD SYVYVIFEDG TDIYWARSRV LEYLNQVSSR
LPQGIQPSLG PDASGVGWIF EYALVDRSGN LDLSQLKSLQ DWYLKLELQS VAGVSEVATV
GGMEQTYQIV IEPDKLAIYK LDIASIKNAI AKSNTEAGGS VIEMAEAEYM VRAKGYRQTL
DDFREIPLGI TSPSGTPLLL KDVATIRKGP ASRRGIAELD GEGEVVGGII IMRYGENALA
TIEAVKDKLE QLKAGLPEGV EIIPTYDRSQ LIESSVENLL HKVVEEMFVV GLVCLLFLLH
ARSTLVAVIT LPLAILIAFI VMNKMGVNAN IMSLGGIAIA IGAVVDGAIV MIENMHKHLE
HFKEKYQRPP NNKEHWKIVT EASIEVGPAL FFSLLIITLS FVPVFALEAQ EGRLFSPLAY
TKTFAMAAAA LLSITLVPIL MGFFIRGKIP KETSNPISRV LIAIYKPSLT LVLRFPKITL
VIAVITLLSA WYPLNNLGSE FMPELEEGDL LYMPTALPGI SASKAAEILQ QTDRLIKTVP
EVKRVFGKVG RAETATDPAP LTMLETTIML NPRDEWREGV ALQDIIDQLQ QTVKVPGLTN
AWVQPIKTRI DMLSTGIKTP VGIKITGADV DELQKIGTNI EAILSKLPNT KSAYAERVGG
GRYIDITPKL DVASRYDMTL TDIQDVVRYA IGGMEIGESV QGAERYPINL RYPRELRDNI
EKLRELPVIT KTGHYLPLRN LADIEITDGA PMLKSENGRL ISWVFVDIEG TSIGEYIDEA
KQALDNVLTI PPRYSYGFAG QYEYMQRVDA KLKKVIPMAL GVIFILLMMT FGSTLQAGII
MLSLPFALVG STWLLYALEY NMSVAVAVGM IALAGVAAEF GVVMLVYLNN AIKHRKETGG
YESVTDLKEA LIEGAVMRIR PKAMTVATIF FGLLPIMWGS GAGNDVMQKI AAPMIGGMVT
APLLSLFVLP ALYLIIYGRK LNSTQ
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