Gene Ssed_0200 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0200 
Symbol 
ID5612904 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp227030 
End bp227650 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content47% 
IMG OID640931026 
ProductLexA repressor 
Protein accessionYP_001471941 
Protein GI157373341 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID[TIGR00498] SOS regulatory protein LexA 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACCAT TAACACCAAG ACAAGCCGAG ATCCTTGAAC TGATTAAACG TAACATTGCA 
GATACAGGCA TGCCGCCTAC CCGTGCAGAG ATTGCGAAAC GTTTAGGATT CAAGAGTGCC
AATGCCGCAG AGGAGCACCT TAAGGCATTA GCTAAAAAAG GCTGTATTGA GATTATACCA
GGTACATCTC GTGGCATTAG ACTGACTCAA GCCAATGAAA GCGAAGAGGA ACTTGGCTTA
CCATTGATAG GTCAAGTAGC CGCTGGTGAA CCGATACTGG CTCAAGAACA TGTCGAACAA
CATTACCAGA TCGACCCTGC TATGTTTCGC CCAAGTGCTG ACTTTCTACT GAGAGTACGT
GGGGACAGCA TGAAGAATAT TGGTATCCTG GAGGGAGATC TTCTTGCCGT TCATAAAGCC
GAACAGGCTC GAAATGGTCA GGTTGTTGTC GCTCGTGTAG AAGATGACGT CACGGTAAAA
CGTTTTGAAA AAAAAGGTAG CATCGTCTAC CTACATGCCG AAAACGAAGA CTACTCTCCA
ATCGTCGTCG ACCTTACCAG TGAGAGTTTA AGCATCGAGG GCTTAGCCGT CGGCGTTATC
AGAAACGGAG ACTGGCAATG A
 
Protein sequence
MRPLTPRQAE ILELIKRNIA DTGMPPTRAE IAKRLGFKSA NAAEEHLKAL AKKGCIEIIP 
GTSRGIRLTQ ANESEEELGL PLIGQVAAGE PILAQEHVEQ HYQIDPAMFR PSADFLLRVR
GDSMKNIGIL EGDLLAVHKA EQARNGQVVV ARVEDDVTVK RFEKKGSIVY LHAENEDYSP
IVVDLTSESL SIEGLAVGVI RNGDWQ