| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0200 |
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| Symbol | |
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| ID | 5612904 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 227030 |
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| End bp | 227650 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931026 |
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| Product | LexA repressor |
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| Protein accession | YP_001471941 |
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| Protein GI | 157373341 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) |
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| TIGRFAM ID | [TIGR00498] SOS regulatory protein LexA |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGACCAT TAACACCAAG ACAAGCCGAG ATCCTTGAAC TGATTAAACG TAACATTGCA
GATACAGGCA TGCCGCCTAC CCGTGCAGAG ATTGCGAAAC GTTTAGGATT CAAGAGTGCC
AATGCCGCAG AGGAGCACCT TAAGGCATTA GCTAAAAAAG GCTGTATTGA GATTATACCA
GGTACATCTC GTGGCATTAG ACTGACTCAA GCCAATGAAA GCGAAGAGGA ACTTGGCTTA
CCATTGATAG GTCAAGTAGC CGCTGGTGAA CCGATACTGG CTCAAGAACA TGTCGAACAA
CATTACCAGA TCGACCCTGC TATGTTTCGC CCAAGTGCTG ACTTTCTACT GAGAGTACGT
GGGGACAGCA TGAAGAATAT TGGTATCCTG GAGGGAGATC TTCTTGCCGT TCATAAAGCC
GAACAGGCTC GAAATGGTCA GGTTGTTGTC GCTCGTGTAG AAGATGACGT CACGGTAAAA
CGTTTTGAAA AAAAAGGTAG CATCGTCTAC CTACATGCCG AAAACGAAGA CTACTCTCCA
ATCGTCGTCG ACCTTACCAG TGAGAGTTTA AGCATCGAGG GCTTAGCCGT CGGCGTTATC
AGAAACGGAG ACTGGCAATG A
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| Protein sequence | MRPLTPRQAE ILELIKRNIA DTGMPPTRAE IAKRLGFKSA NAAEEHLKAL AKKGCIEIIP
GTSRGIRLTQ ANESEEELGL PLIGQVAAGE PILAQEHVEQ HYQIDPAMFR PSADFLLRVR
GDSMKNIGIL EGDLLAVHKA EQARNGQVVV ARVEDDVTVK RFEKKGSIVY LHAENEDYSP
IVVDLTSESL SIEGLAVGVI RNGDWQ
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