| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0197 |
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| Symbol | |
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| ID | 5612483 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 222914 |
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| End bp | 224518 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931023 |
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| Product | cytochrome-c oxidase |
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| Protein accession | YP_001471938 |
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| Protein GI | 157373338 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
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| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACAA TTACACAAGA TTCACCAGCA GCTCAGGACG ATCACCATGA TGACCATCAT
CATGGGGCGC CAAAAGGCAT CATGCGCTGG CTCTTAACCA CCAATCATAA AGATATAGGC
ACACTCTACC TATGGTTCAG CTTTATTATG TTCCTAACAG GTGGTGCCAT GGCGATGGTG
ATCCGCGCCG AACTATTCCA GCCTGGATTA CAATTAGTTG AACCCAATTT TTTTAATCAG
ATGACCACCG TTCACGGGCT TATAATGGTA TTCGGAGCCG TAATGCCTGC CTTCACTGGG
CTGGCAAACT GGTTAATCCC TATGATGATT GGGGCACCGG ATATGGCGCT ACCAAGAATG
AATAACTGGA GCTTCTGGAT TTTACCCTTT GCCTTCGCGA TCTTACTGAG TTCACTGTTT
ATGGAGGGAG GCGGACCTAA TTTTGGTTGG ACATTCTATG CACCACTGTC GACAACCTAC
AGCCCGGATA GTACCGCTTT ATTTGTATTT TCAGTCCATA TCATGGGAAT GAGCTCCATC
ATGGGCGCGA TTAATGTCAT CGTAACTATC GTTAATATGC GCGCCCCCGG CATGAGATGG
ATGAAGCTGC CTCTATTTGT CTGGACCTGG CTAATCACCG CATTCTTATT GATTGCGGTA
ATGCCGGTAT TAGCCGGCAC CGTGACCATG GTGCTCACCG ATAAATACTT TGGCACCAGT
TTTTTTGATG CGGCAGGAGG CGGAGATCCT GTGATGTTCC AGCATATCTT CTGGTTCTTC
GGTCACCCCG AAGTCTACAT CATGATCTTA CCCTCATTCG GTATCATCTC AGCCATCGTT
CCCGCTTTTA GCCGCAAACG GCTCTTCGGT TACTCCTCTA TGGTCTATGC CACGGCGAGT
ATCGCCATCC TCTCCTTCCT GGTATGGGCA CACCATATGT TCACCACCGG TATGCCGGTA
TTCGCCGAAC TGTTTTTCAT GTACTGCACC ATGCTTATCG CTGTACCAAC CGGCGTTAAG
GTATTCAACT GGGTCGCCAC GATGTGGCGT GGCTCTATCA GCTTCGAAAC TCCTATGCTA
TTCGCGGTAG CCTTTATCAT ACTGTTCACC ATAGGGGGAT TTTCCGGCTT AATGCTGGCC
ATAACACCGG TGGATTTCCA ATACCATGAT ACTTACTTTG TGGTCGCTCA CTTCCACTAC
GTGCTCGTCA CCGGGGCGAT ATTTTCTATT ATGGCGGGTG CCTATTATTG GTTACCTAAA
TGGACCGGGA ATATGTACGA CGAGAAGCTG GGGAGGCTCC ATTTCTGGTG CTCTGTTATC
TCGGTCAATG TGCTGTTCTT CCCCATGCAC TTCTTAGGAT TGGCGGGCAT GCCCAGACGA
ATTCCTGATT ACGCCGTTCA ATTTGCAGAT GTGAATCAGA TAGTCTCTAT AGGTGGTTTC
GCATTTGGTC TTTCACAGCT GATCTTCCTT GCCGTTGTGA TTAAGTGTAT TCGCGGAGGT
GAAAAGGCGC CGGCAAAACC CTGGGATGGA GCCGAAGGTT TGGAGTGGAC ACTACCCAGC
CCGGCACCCT ATCACACCTT CTCAACACCA CCGGAGATTA AGTAA
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| Protein sequence | MSTITQDSPA AQDDHHDDHH HGAPKGIMRW LLTTNHKDIG TLYLWFSFIM FLTGGAMAMV
IRAELFQPGL QLVEPNFFNQ MTTVHGLIMV FGAVMPAFTG LANWLIPMMI GAPDMALPRM
NNWSFWILPF AFAILLSSLF MEGGGPNFGW TFYAPLSTTY SPDSTALFVF SVHIMGMSSI
MGAINVIVTI VNMRAPGMRW MKLPLFVWTW LITAFLLIAV MPVLAGTVTM VLTDKYFGTS
FFDAAGGGDP VMFQHIFWFF GHPEVYIMIL PSFGIISAIV PAFSRKRLFG YSSMVYATAS
IAILSFLVWA HHMFTTGMPV FAELFFMYCT MLIAVPTGVK VFNWVATMWR GSISFETPML
FAVAFIILFT IGGFSGLMLA ITPVDFQYHD TYFVVAHFHY VLVTGAIFSI MAGAYYWLPK
WTGNMYDEKL GRLHFWCSVI SVNVLFFPMH FLGLAGMPRR IPDYAVQFAD VNQIVSIGGF
AFGLSQLIFL AVVIKCIRGG EKAPAKPWDG AEGLEWTLPS PAPYHTFSTP PEIK
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