Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0196 |
Symbol | |
ID | 5612482 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 222342 |
End bp | 222911 |
Gene Length | 570 bp |
Protein Length | 189 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640931022 |
Product | cytochrome C oxidase assembly protein |
Protein accession | YP_001471937 |
Protein GI | 157373337 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG3175] Cytochrome oxidase assembly factor |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTAAGA ACCTGGCGAA CGCTAACCGA AAGCTTATCA GCTGGCTCAT TGCTGCGGCG ATAGGCATGT TCGGCTTTGG CTTCGCTCTG GTTCCCCTGT ATGACGTGCT CTGTGAACAG CTGGGGATAA ATGGCAAAAC CCAGAGCACG GCCAGCAGTT ATGAGCCTGT CACTATTGAT AAAAACCGCA CCATAACCGT TGAATTTATG GCACAGATAC AAAGTGATCT GCCTTGGGAA TTTAAACCTG AGGTGAAGCG CCTGCGAGTT CACCCCGGAG AGTTAGTTCG CACTAACTTT AATGCCAAAA ACCTCTCCAT GATTGAGCTT GTAGGACAAG CAATCCCCTC TGTATCCCCC GGACAGGGAG CCGCCTACTT CAATAAAACA GAGTGCTTCT GCTTTAATCA ACAGAGATTA ACAGCAAAAG CCAGTGCAGA GTTACCACTG ATATTTTACG TGGATCCGGA TCTTCCTGAT TCCATAACGA CACTGACTCT CTCTTATACC CTCTACAACA TCACCGACCG TGAGTATGTC AGCGTTGTAG AGCAAGGAGC AGCAAAATGA
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Protein sequence | MAKNLANANR KLISWLIAAA IGMFGFGFAL VPLYDVLCEQ LGINGKTQST ASSYEPVTID KNRTITVEFM AQIQSDLPWE FKPEVKRLRV HPGELVRTNF NAKNLSMIEL VGQAIPSVSP GQGAAYFNKT ECFCFNQQRL TAKASAELPL IFYVDPDLPD SITTLTLSYT LYNITDREYV SVVEQGAAK
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