Gene Ssed_0196 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0196 
Symbol 
ID5612482 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp222342 
End bp222911 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content48% 
IMG OID640931022 
Productcytochrome C oxidase assembly protein 
Protein accessionYP_001471937 
Protein GI157373337 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3175] Cytochrome oxidase assembly factor 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTAAGA ACCTGGCGAA CGCTAACCGA AAGCTTATCA GCTGGCTCAT TGCTGCGGCG 
ATAGGCATGT TCGGCTTTGG CTTCGCTCTG GTTCCCCTGT ATGACGTGCT CTGTGAACAG
CTGGGGATAA ATGGCAAAAC CCAGAGCACG GCCAGCAGTT ATGAGCCTGT CACTATTGAT
AAAAACCGCA CCATAACCGT TGAATTTATG GCACAGATAC AAAGTGATCT GCCTTGGGAA
TTTAAACCTG AGGTGAAGCG CCTGCGAGTT CACCCCGGAG AGTTAGTTCG CACTAACTTT
AATGCCAAAA ACCTCTCCAT GATTGAGCTT GTAGGACAAG CAATCCCCTC TGTATCCCCC
GGACAGGGAG CCGCCTACTT CAATAAAACA GAGTGCTTCT GCTTTAATCA ACAGAGATTA
ACAGCAAAAG CCAGTGCAGA GTTACCACTG ATATTTTACG TGGATCCGGA TCTTCCTGAT
TCCATAACGA CACTGACTCT CTCTTATACC CTCTACAACA TCACCGACCG TGAGTATGTC
AGCGTTGTAG AGCAAGGAGC AGCAAAATGA
 
Protein sequence
MAKNLANANR KLISWLIAAA IGMFGFGFAL VPLYDVLCEQ LGINGKTQST ASSYEPVTID 
KNRTITVEFM AQIQSDLPWE FKPEVKRLRV HPGELVRTNF NAKNLSMIEL VGQAIPSVSP
GQGAAYFNKT ECFCFNQQRL TAKASAELPL IFYVDPDLPD SITTLTLSYT LYNITDREYV
SVVEQGAAK