| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0190 |
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| Symbol | |
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| ID | 5611747 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 217720 |
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| End bp | 218634 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931016 |
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| Product | protoheme IX farnesyltransferase |
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| Protein accession | YP_001471931 |
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| Protein GI | 157373331 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
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| TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAAC AACTTTCGAT TCCATCTGCA ACATCTGGCA GCAAGAGTCA CTCCCTTGCA
TGGCGGCCAT ACTATGAAAT GACAAAACCT AAGGTCGTTG CTCTCATGCT GCTTACTGTT
TTAGTGGGCA TGTGTCTCGC CGTCCCGGGC AGCGTACCTC TTCAACCATT AGTCATTGGC
ATGATTGGAA TTGGAATGAT GGCTGGAGCG GCCGCAGCGT TTAATCATCT CATCGATCGC
AAAATTGATG GATTAATGGC GCGCACTTAT AACCGACCGC TTCCCAAAGG AAGGGTGTCC
ATCCCTAAGG CTCTCACCTT TGCAATCTCT CTGGCGGCCT TAGGTTTTGT TTTGCTCTAC
ACTCTGGTCA ATGAGCTCAC CGCTTGGCTG ACCTTTGCGA GTTTGATCGG CTACGCCCTC
GTTTATACCG CCTATCTTAA GCGGGCGACG CCGCAAAACA TTGTTGTAGG TGGTTTAGCA
GGTGCAATGC CACCTCTGCT AGGCTGGACC TCTGTGACCG GAGAGTTTCA CGGTCATGCG
CTGTTACTGG TCATTATTAT TTTTGCCTGG ACCCCCCCCC ACTTCTGGGC CCTGGCGATC
CATAGAAAGG CTGAGTACGC GAAAGTCGAT ATCCCAATGC TTCCGGTCAC CCACGGAACT
GAGTTTACCA AAACCTGCAT CTTGCTCTAC ACAGTGCTTC TGGCTATCGC TTGCCTCTTA
CCCGTGCTGG TCGGTATGTG CGGCCCCGTC TATTTAGTCG GTTCAACCCT GCTAAGTTGT
GGCTTTATCT ATAAGGCGTG GGAGCTAAAA TTTGATGATA AACCGGGTCT GGCAATGCAG
GTCTTTCGCT TCTCGATTTA TCACCTGATG TTACTCTTCC TCGTTCTTTT AGTAGACCAT
TACCTATGGG TATAA
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| Protein sequence | MAKQLSIPSA TSGSKSHSLA WRPYYEMTKP KVVALMLLTV LVGMCLAVPG SVPLQPLVIG
MIGIGMMAGA AAAFNHLIDR KIDGLMARTY NRPLPKGRVS IPKALTFAIS LAALGFVLLY
TLVNELTAWL TFASLIGYAL VYTAYLKRAT PQNIVVGGLA GAMPPLLGWT SVTGEFHGHA
LLLVIIIFAW TPPHFWALAI HRKAEYAKVD IPMLPVTHGT EFTKTCILLY TVLLAIACLL
PVLVGMCGPV YLVGSTLLSC GFIYKAWELK FDDKPGLAMQ VFRFSIYHLM LLFLVLLVDH
YLWV
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