Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0189 |
Symbol | |
ID | 5611746 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 217009 |
End bp | 217665 |
Gene Length | 657 bp |
Protein Length | 218 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640931015 |
Product | electron transport protein SCO1/SenC |
Protein accession | YP_001471930 |
Protein GI | 157373330 |
COG category | [R] General function prediction only |
COG ID | [COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAAAC GTTTAACTCG GGTTGTTGCA GCGCTTCTGG CTGTTGTCAT AGTAGGTCTG GGAAGCTTCA CCGCGCTTCA ATTTCAATCG ATGAGTGAAG AGGTGAGCCA GATAGAGTTA TCCAATAGCT TTGTCTACCC TACCCCCAAA AGACTGCCGC AATTTAAGCT GATGGAGCAA CATGGCACCT CTTTCACTAA TGCTGACTTA AAGGGTAAGT GGAGCCTGTT TTTCATAGGC TATACCTCTT GTCCCGATGT TTGCCCGACC ACTATGGCCA AACTCACAGC GGCTTATCCC GAACTGTTGG AGTCCGCCGA TATACAGGTG ATTTTTCTCT CCGTCGATCC CCAAAGAGAC ACGCAAGATA AGCTATTAAA CTATATGGAT TTCTTTAACC CCAAATTCAT CGCGTTAACG GGAGACCACA CACAGCTATT CCCTCTAACC CGAAGCCTGG GCTTCGTATA TGCCATGGTC GGAGATGGAG AAAACTATCA AATCGATCAT AGTGCATCGA TGGCACTTAT CTCACCCGAA GGAGAGAATA TAGCCATCAT TAAGCCTAAG TCTTCAACTC CCGGTACACT CCCTCAAATA ACGTCACAAG CCCTCATCTC AGACATTCAT CAAATCATAC AAAGAAAAAA TGGGTGA
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Protein sequence | MNKRLTRVVA ALLAVVIVGL GSFTALQFQS MSEEVSQIEL SNSFVYPTPK RLPQFKLMEQ HGTSFTNADL KGKWSLFFIG YTSCPDVCPT TMAKLTAAYP ELLESADIQV IFLSVDPQRD TQDKLLNYMD FFNPKFIALT GDHTQLFPLT RSLGFVYAMV GDGENYQIDH SASMALISPE GENIAIIKPK SSTPGTLPQI TSQALISDIH QIIQRKNG
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