Gene Ssed_0189 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0189 
Symbol 
ID5611746 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp217009 
End bp217665 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content46% 
IMG OID640931015 
Productelectron transport protein SCO1/SenC 
Protein accessionYP_001471930 
Protein GI157373330 
COG category[R] General function prediction only 
COG ID[COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAAAC GTTTAACTCG GGTTGTTGCA GCGCTTCTGG CTGTTGTCAT AGTAGGTCTG 
GGAAGCTTCA CCGCGCTTCA ATTTCAATCG ATGAGTGAAG AGGTGAGCCA GATAGAGTTA
TCCAATAGCT TTGTCTACCC TACCCCCAAA AGACTGCCGC AATTTAAGCT GATGGAGCAA
CATGGCACCT CTTTCACTAA TGCTGACTTA AAGGGTAAGT GGAGCCTGTT TTTCATAGGC
TATACCTCTT GTCCCGATGT TTGCCCGACC ACTATGGCCA AACTCACAGC GGCTTATCCC
GAACTGTTGG AGTCCGCCGA TATACAGGTG ATTTTTCTCT CCGTCGATCC CCAAAGAGAC
ACGCAAGATA AGCTATTAAA CTATATGGAT TTCTTTAACC CCAAATTCAT CGCGTTAACG
GGAGACCACA CACAGCTATT CCCTCTAACC CGAAGCCTGG GCTTCGTATA TGCCATGGTC
GGAGATGGAG AAAACTATCA AATCGATCAT AGTGCATCGA TGGCACTTAT CTCACCCGAA
GGAGAGAATA TAGCCATCAT TAAGCCTAAG TCTTCAACTC CCGGTACACT CCCTCAAATA
ACGTCACAAG CCCTCATCTC AGACATTCAT CAAATCATAC AAAGAAAAAA TGGGTGA
 
Protein sequence
MNKRLTRVVA ALLAVVIVGL GSFTALQFQS MSEEVSQIEL SNSFVYPTPK RLPQFKLMEQ 
HGTSFTNADL KGKWSLFFIG YTSCPDVCPT TMAKLTAAYP ELLESADIQV IFLSVDPQRD
TQDKLLNYMD FFNPKFIALT GDHTQLFPLT RSLGFVYAMV GDGENYQIDH SASMALISPE
GENIAIIKPK SSTPGTLPQI TSQALISDIH QIIQRKNG