| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0186 |
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| Symbol | |
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| ID | 5611821 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 214063 |
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| End bp | 216129 |
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| Gene Length | 2067 bp |
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| Protein Length | 688 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931012 |
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| Product | CheA signal transduction histidine kinase |
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| Protein accession | YP_001471927 |
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| Protein GI | 157373327 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAATCG ATCTCAGCCA ATTTAGCCAG GTTTTTTTCG AGGAAAGCCT GGAAGGCCTA
GAAAGCATGG AGTCTGAGTT ACTCAAGCTT GATGTCAACG AGCCGGAAGA TGAATCTATC
AACACGATTT TCAGAGCTGC ACATTCTATA AAAGGAGGCA GCGCCACATT CGGTTTCTCT
CAAGTCGCGA ACTACACACA CCTGCTCGAA ACTCTGCTCG ATGAGATAAG AGATGGTCGT
CGCCAGATGA CGAGTGAACA CCAAGACATG CTTCTTCTCT CGGTGGATCT GTTGCGTAAC
ATGATCGATG CCCTGATGCG CAAAACAGAC TTCGATGACC CGTTATTATC TCAACTTGAA
AAACGGTTTA CTTCGGAGCT AGAGGGGGCC GCGGAAGACA TTCAAGATGA GGATGCTACA
CAAGCCGATG CTGAACAGGC ACCCGATGAG CAACTCTGGC ATATAGATTT TCAGGCCGGA
ATAGATATTC TGCGATGCGG GAACGATCCC CTGCTCATGT TCACAGAACT AAGACAGCTG
GGTGAACTCA CCGTTAAGTT AGCCGAGATA AATCACCCGG ATTTTGGCGA TATAGACCCG
GAAGCCTGTT ACCTCAGTTG GCACCTTGAA CTCATCACGG ATCAAAAAAT TGAACGTCTG
AAAGAGGTAT TTGAATGGGT CGAAGATGAG TGCACGATTC ACTACAGTTC ATCGGTCATA
GATACCGGGG AGACAAGAGA GCTCCAAGGC ACTTCCGAAT CACCTCAGGC TTCTCCAGTG
CCTGAATCAA CTCAGGCATC AACTTCGACA TCAGATAGCC TACCCGCTGA GGTGGTTAAG
CCCAAAATCG TTTCGCAAGC AAAATCTCCC GAGGGTGGCT CCATTCGAGT CAGCATAGAG
AAAATTGATC TACTCATAAA TATGGTCGGA GAGCTGGTCA TTACCCAGGC GATGTTAGGT
CAGATAGGTC AACAAGATGA GATCGATGAG GAATCATTAC TATCCATGAA ACAAGGGTTA
GAGCAACTCG CCTCACATAC CCGGGACCTT CAAGAAAGCG TCATGCAGAT CAGAATGTTA
CCCATCAGCT TTGCCTTCAA TCGCTTCCCC AGACTCGTTA GAGATATTGG TCAGCAATTA
GGCAAAAAGG TCGATTTAAT CCTTAATGGG GAAGACACCG AGCTGGATAA AACGGTAATG
GAGAAAATTG TCGACCCTAT GGTACATCTG GTTAGAAACT CACTGGATCA TGGTCTGGAA
ACACCTGAAA TACGGGTCAG TAAAGGCAAG CCAGAAACGG GCAGCATTAC GCTCAACGCT
TTCCATCAAG GTGGCAATAT CATTATCGAG ATCATCGATG ATGGTGCCGG GCTGGATACT
GATAGGATAC TTCAAAAAGC CAGAGATAAA GGCTTGGTTG CAGAAGATGA AGAGCTTAGT
ACAGAAGCGA TTCATCAACT TATTTTCAAG GCTGGGTTCT CTACCGCTGA TGCCGTCTCC
GATCTATCCG GCAGAGGCGT TGGCATGGAT GTCGTTCGCC GAAACATTAA TGAACTCAAC
GGCACCATTG AACTTAAGTC GACTCAAGAT AAAGGTAGCC GTTTCACCAT ACGTCTTCCG
CTTACTCTGG CAATTCTCGA CGGCCAGCTG GTAAGAATAG GTCATCACAC CTATGTCGTA
CCACTCGTCT CAATTCATGA ATCTTTGCAG GTAGAACCAC AACGCATCAA TCGTATCAGT
GAGAACCATG AGCTGGTCAG GCTAAGAGAT GAATACCTTC CGGTGATCAA AGTGTTTCAA
GAGTTCGATC ATGAAGCCGA TGCCATCGAG ATTAAAGATG GTCTGGTCAT GGTCGTTGAC
TCCAATAATG AAAAAGTCGG CTTACTCGTC GATGAACTGT TATCCCAGCA ACAGGTGGTT
ATCAAAAGTC TGGAAGACAA CTATAGCAAG GTGCCCGGCG TTTCAGGAGC CACTATTCTT
GGTGATGGAA CCGTTGCTTT AATTATTGAT ATTTCTGGAT TAGTTAGCCT GGCAGGCATC
ACTAATACCA ATGAGCATGC AGCTTAA
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| Protein sequence | MEIDLSQFSQ VFFEESLEGL ESMESELLKL DVNEPEDESI NTIFRAAHSI KGGSATFGFS
QVANYTHLLE TLLDEIRDGR RQMTSEHQDM LLLSVDLLRN MIDALMRKTD FDDPLLSQLE
KRFTSELEGA AEDIQDEDAT QADAEQAPDE QLWHIDFQAG IDILRCGNDP LLMFTELRQL
GELTVKLAEI NHPDFGDIDP EACYLSWHLE LITDQKIERL KEVFEWVEDE CTIHYSSSVI
DTGETRELQG TSESPQASPV PESTQASTST SDSLPAEVVK PKIVSQAKSP EGGSIRVSIE
KIDLLINMVG ELVITQAMLG QIGQQDEIDE ESLLSMKQGL EQLASHTRDL QESVMQIRML
PISFAFNRFP RLVRDIGQQL GKKVDLILNG EDTELDKTVM EKIVDPMVHL VRNSLDHGLE
TPEIRVSKGK PETGSITLNA FHQGGNIIIE IIDDGAGLDT DRILQKARDK GLVAEDEELS
TEAIHQLIFK AGFSTADAVS DLSGRGVGMD VVRRNINELN GTIELKSTQD KGSRFTIRLP
LTLAILDGQL VRIGHHTYVV PLVSIHESLQ VEPQRINRIS ENHELVRLRD EYLPVIKVFQ
EFDHEADAIE IKDGLVMVVD SNNEKVGLLV DELLSQQQVV IKSLEDNYSK VPGVSGATIL
GDGTVALIID ISGLVSLAGI TNTNEHAA
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