| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0185 |
|---|
| Symbol | |
|---|
| ID | 5611820 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 213460 |
|---|
| End bp | 214011 |
|---|
| Gene Length | 552 bp |
|---|
| Protein Length | 183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640931011 |
|---|
| Product | CheW protein |
|---|
| Protein accession | YP_001471926 |
|---|
| Protein GI | 157373326 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0835] Chemotaxis signal transduction protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAGC TAACCCAACA AGAGCAGGCC AATATGGATG ATGCCAGTCA ACAATATTTA
ACTTTCATCA TGGCTAGCGA AGAATATGGT GTCGATATTC TTTCTGTACA AGAGATTAGA
GGCTGGGAAG CGACGACAGT CATTCCAAAC TCCCCCAGTC ATGTGAAGGG TGTTATTAAC
CTCAGGGGGA CCATAGTACC CATCATAGAT CTGAGACAGA GGTTTGGTAT TGAGACTCTC
GAATATGGAG CCACAACCGT AGTCATAGTC GTTAAGGTTG CCATGTCTGA TGAGCACAAA
GTCATAGGTA TTGTTGTCGA TGCCGTTTCC GATGTGTTTA GTGTGAATGA TGCCGATGTG
CGCGATGCAC CCGATTTTGG CGACGACACT AATCTGAGCT TTATAAAAGG GCTTACCAAC
GCCGCAGATA AGATGGTTAT CTTACTGGAC ATTAATATGC TCCTCGGCAG TGAGGTTTTG
CCTGAAGCAT CTCAACTTTC TAATTTAATT AACAATATTG ATGCCCAGCA GCCACAAGCT
GTTAATGCAT AA
|
|---|
| Protein sequence | MTELTQQEQA NMDDASQQYL TFIMASEEYG VDILSVQEIR GWEATTVIPN SPSHVKGVIN
LRGTIVPIID LRQRFGIETL EYGATTVVIV VKVAMSDEHK VIGIVVDAVS DVFSVNDADV
RDAPDFGDDT NLSFIKGLTN AADKMVILLD INMLLGSEVL PEASQLSNLI NNIDAQQPQA
VNA
|
|---|
| |