| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0181 |
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| Symbol | |
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| ID | 5611416 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 207731 |
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| End bp | 208792 |
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| Gene Length | 1062 bp |
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| Protein Length | 353 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931007 |
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| Product | polysaccharide deacetylase |
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| Protein accession | YP_001471922 |
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| Protein GI | 157373322 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAAAG TTGCTGTAAT AAGGCTGCTA ATACTACTTG GCTGCTCAAT GTTTGGTTTT
TCGGTTCACT CTGCAGTGAT TTTGCAATAT CACCATGTAT CTGAAGATAC GCCTGCTATC
ACCAGTGTGA CCCCTGCTCA ATTTAGCGAG CAGATGCAAT ATCTGGCCGA TAATGATTTT
GTTGTGACGC CGCTTTCACA AGTGGTCGAT GCCATTAAAA GTGAGCAGGA ATTACCGGCC
AAAACGGTAG TGATAACGTT TGACGATGGT TATCAAAGCA TTGCTAAGAC GGCTCACCCT
ATTTTAAAGG AATATGGATT CCCCTACACG GTATTTGTCT CGGTCGAGCC GATTAAAGCA
AGGTATCGCG GCATGATGAG TTGGGACGAC CTCATCGGGC TCTCCCGTGA GGGGGCTGAG
ATTGCTAACC ACAGCTGGGG ACACGAGCAC CTGATACGTC AACTGGAAGG TGAATCACAG
GATCAGTGGC TGGCGCGTAT TGAGGAAAAT ATTCTTAATA CAGAGGAGGA GATAAGCAAA
GCTACGGGCC AAAGCCATAA GATGCTGGCC TACCCCTATG GGGAGTACAA TCAAGCGATA
GAGTCGATGT TGAGTCAGCA TGGCTTTATC GGATTAGGCC AGCAGTCTGG GGCTGCAGGC
CCCTATTCCC CTTTAACGGC TCTGCCGAGA TTTCCGGTTG CGGGTGTCTA TGCCGAGCTG
CCGAGTTTAA AGGTTAAGCT GCATAGTTTG AATATGCCTG TTTTATCACA AACCCATAGT
GATCCTGAGT TGAAAATGGG TCAGTGGCGT CCCGAATTAA GGGTCACGTT GGATATGTCG
GATATCTATC CACACCAGAT GATGTGCTTC ATACAGGGGC AGGGAGCTAA AAAACCGTTA
TGGTTGAGTG CGAATGAATT CAGTATTCGA GCCGAATTTG ATCTACCCGC TGGGCGATCC
AGATATAACT GCACCGCGCC AAGCAAGAGC AGATCGGGTT ACTACTGGTT TTCACAACCT
TGGGTGAGAG CCAAGGATGA TGGAACATGG ATTAAGGAGT AG
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| Protein sequence | MFKVAVIRLL ILLGCSMFGF SVHSAVILQY HHVSEDTPAI TSVTPAQFSE QMQYLADNDF
VVTPLSQVVD AIKSEQELPA KTVVITFDDG YQSIAKTAHP ILKEYGFPYT VFVSVEPIKA
RYRGMMSWDD LIGLSREGAE IANHSWGHEH LIRQLEGESQ DQWLARIEEN ILNTEEEISK
ATGQSHKMLA YPYGEYNQAI ESMLSQHGFI GLGQQSGAAG PYSPLTALPR FPVAGVYAEL
PSLKVKLHSL NMPVLSQTHS DPELKMGQWR PELRVTLDMS DIYPHQMMCF IQGQGAKKPL
WLSANEFSIR AEFDLPAGRS RYNCTAPSKS RSGYYWFSQP WVRAKDDGTW IKE
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