| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0179 |
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| Symbol | |
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| ID | 5610770 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 205299 |
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| End bp | 205877 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931005 |
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| Product | putative DNA uptake protein |
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| Protein accession | YP_001471920 |
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| Protein GI | 157373320 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[S] Function unknown |
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| COG ID | [COG0316] Uncharacterized conserved protein
[COG0694] Thioredoxin-like proteins and domains |
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| TIGRFAM ID | [TIGR00049] Iron-sulfur cluster assembly accessory protein
[TIGR03341] IscR-regulated protein YhgI |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCACCA TTTCCGATGC AGCTCAGGCC CATTTTGTTA CTTTGTTAGC AGATCAGCCT
GAAGGAACTC ATATTCGTGT ATTTGTAATT AGCCCAGGCA CAGCAACGGC TGAGTGTGGC
GTTTCATATT GTCCGCCTGA CGCTGTCGAA GCCGATGATA TGGAGTTCGA GTTCAATGGC
TTTAATGCCA TGGTCGACGA GAAGAGTGCT CCTTTCCTTG AAGAGGCAAG CATTGACTTC
GTCACCGACC AATTAGGTTC ACAGTTAACG CTTAAGGCGC CAAACGCTAA GATGCGTAAA
GTGGCAAGCG ACGCACCACT GAGTGAGCGT ATCGATTATG TGATCCAGTC AGAGATCAAC
CCGCAACTTG CGAGTCATGG TGGTAACATC ATGTTGGTCG AAGTGACTGA AGAGGGAACG
GCTATCCTGC AGTTTGGTGG CGGTTGTAAT GGTTGCTCTA TGGTCGATGT CACGCTAAAA
GATGGCATTG AAACACAGTT ACTCGAAAAG TTTCCTGGCG AGCTGACCGG TGTTAAAGAT
GTGACCGAAC ATCAACACGG CGATCACTCT TATCAGTAA
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| Protein sequence | MITISDAAQA HFVTLLADQP EGTHIRVFVI SPGTATAECG VSYCPPDAVE ADDMEFEFNG
FNAMVDEKSA PFLEEASIDF VTDQLGSQLT LKAPNAKMRK VASDAPLSER IDYVIQSEIN
PQLASHGGNI MLVEVTEEGT AILQFGGGCN GCSMVDVTLK DGIETQLLEK FPGELTGVKD
VTEHQHGDHS YQ
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