Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0178 |
Symbol | |
ID | 5610769 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 202523 |
End bp | 205069 |
Gene Length | 2547 bp |
Protein Length | 848 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640931004 |
Product | peptidase M14, carboxypeptidase A |
Protein accession | YP_001471919 |
Protein GI | 157373319 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGAGAT CCTGTCTGTA TTTTCTAGCG ACTTACTGCT CATTGTCTTT ACTGCTTCCT GCAATGGCTG CAGAGCCGCA CGACGACAAC GCGATCTTAA CTGCAAAATC CGATACAAGC CTGACCTCTC CAACTCAGTT TTTAGACTAT CCCCTTGGTC AGTGGCATCT GCGGCATGAC CAGATAAACT TCTATCTTAA GCAGCTAGCC CTTGAAAGTG CCAAAGTCTC CATCGAAAAG AGTGGCCAAA GCCATGAAGC CAGGCAGCAA TTAACGGCTG TGATCAGCTC AGCCAAAAAC CAAGCACGAC TGGATGAGAT TTTACAACAG AGACAAAAAG TTAAGTCAGG TGATGCGCAG CAGGAGCCCT TAGTGATCTG GCTGGCTTAC TCGATTCATG GTGACGAAGC CAGCGGCGCA CACGCGGCAT TGAAACTCAG CCATCTACTC GCAAGCAGTA ACGAGCAATG GATTAACCGC TTACTGGACG AAGCGGTCAT TCTTATCACT CCGAGTCAAA ATCCGGATGG TTTAGATCGA TTTTCAAACT GGACCAATAA TTACCGTGGT CAGGTGGATG TGAGCGACAG TAACCATAGG GAGCACAGAC AGAACTGGCC GAGTGGCAGG AGCAATCACT ATTTTGCCGA TCTGAACCGT GACTGGCTTT TCCTACGCCA CCCGGAATCT CGAGGCAGGA TAGCGCTGTT CCACAAGTGG CAGCCTCACT ATGTGGGTGA TTTTCATGAA ATGGGACGAG ATCAGAGCTA CTTTTTCCAA CCCGGCGTCC CCTCTCGCAC TCACCCTTTA ACGCCAAAAG ACAATCAGGC ACTGACTGCA AAACTAGCCA AGTTTCATCA GCAAGCACTG GATGAGCTCA AACAAAGCTA CTTCAGTCGA CAGATGTTCG ACGATTTTTA CTATGGAAAA GGCTCAACTT ATCCGGATAT CAACGGATCT ATCGGTGTAC TCTTCGAACA AGCTAGCCCC AGAGGTCAGG TTCAAGCGAC ACGAAATGGA GAGTTAAGAC TGCAAGAGGC CATAGATAAC CAAGTTGCGA CCTCAATATC CAGCCTAAAG GGAGCTTTGG CACTAAAAGA TGAGCTGCTT GAATATCAGA GTGAATTTTA CCAAGGCAGG GACAAGACAC TGAACAAAGG ACGTCAACAA GGCTTCCTTA TTGGCGCCCC CGCTAATGCA AATCGAATTT CCGACCTGAG CGCCCTGCTC GACCAACACC ATATCGAGTT TTATTATCTG ACTAAACCTG TCACCCAAGG CAAGGCAGAT TTTGCCGTGC AAACCAGTCT ATTTATTCCT GTTAATCAAC CGCAAAAAAG TCTATTGCTG GCCATGTTCG ATAATAGAAC TGAGTTTACC GATCCTACTT TTTATGATGT TTCCAGTTGG AACCTTGAGC AAGCTTATCA CCTTCAGTTA ATAAGAAATG CTAAGCTGGA TATCGACGTA TTATCTAAAA AACGGCCTAA ACCGACCGCC TTCAACGTCG ATGAACAGGC GGTATCCCTG CTCATAAATT GGCAACAGGA TAATGCAGCC CCCGTTCTTC AACAGTTGTT GCAAGCCGGT ATTCGAACCA AGTTTGCCGG CAAGCCCTTT ACCATAAGAG TCGATGACAT TGACCTTGCC TTCCCCGCAG GAAGCTTGCA GATTCCACTG AAACAAAGTG GTAACTCAGC AGAGACAATT ACCACGAAGC TGACAGAGCT GGTTAAGGGA TATCCGTTAA ATATTACCTC CGTTAACACC AGCAGTTCGG TTTCAGGCAT CGACCTGGGT AGTCCTGATT TTCACCCTGT TAAACCGATA AAGCCTCTGT TAGTAACAGG GCAAGGAACT GATGCATCAG AGGTTGGAGA GCTTTGGTAT TACTTAGATA CAAAGTTGGC CGTCCCCCTA ACACTTGTCG ATGTTGGACG CCTGACACGC CTTACCTTAA GTGACTATAG CCACATTATT CTACCGGGGG GCAGCTACTC CTCACTCGAT GAGAAGTTCG CACGTAAACT GGGACAGTTT GCCAAGCTGG GCGGCACCAT TATTGCTCAA AAAGGCGCGC TAACCTGGCT AAATAAGGGT CACCTCCTTA AAACCGATCT TAAGGAGGCA CGTTTTTATA AGCAGCTGTT TGATAGCACC AATCTGAGCT TCGCAGACAG AGAGAAGCTT GAGGCCAGGC AGTCAATCGG CGGCGCAATT CTTGAGTTAA CACTCGATCC CACTCATCCA TTAAGCTTCG GAATACGCGG TAACAGCCTA CCTATATTGA AGAACAAAGC CTTAGGGCTG ACCGAAACGT CGACCCCCTT CATTGTGGCG GCCAAATATG CCGAAGAGCC ACTCTTGAGT GGCTATCTCG CCGAAGAATA TCAGCGAAGT TTCTCTATGA GCCCGGCAAT ACTCCTCGAA CCCAGAGGAA AAGGAGCCAT AGTGATCCTG GCGGATAATC TAATGTTCCG GAACATCTGG TTGGGATCAG AAAAAATCTA TGCCAACGCC CTCTATTTTG TACCAGCCCT GGATTAG
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Protein sequence | MLRSCLYFLA TYCSLSLLLP AMAAEPHDDN AILTAKSDTS LTSPTQFLDY PLGQWHLRHD QINFYLKQLA LESAKVSIEK SGQSHEARQQ LTAVISSAKN QARLDEILQQ RQKVKSGDAQ QEPLVIWLAY SIHGDEASGA HAALKLSHLL ASSNEQWINR LLDEAVILIT PSQNPDGLDR FSNWTNNYRG QVDVSDSNHR EHRQNWPSGR SNHYFADLNR DWLFLRHPES RGRIALFHKW QPHYVGDFHE MGRDQSYFFQ PGVPSRTHPL TPKDNQALTA KLAKFHQQAL DELKQSYFSR QMFDDFYYGK GSTYPDINGS IGVLFEQASP RGQVQATRNG ELRLQEAIDN QVATSISSLK GALALKDELL EYQSEFYQGR DKTLNKGRQQ GFLIGAPANA NRISDLSALL DQHHIEFYYL TKPVTQGKAD FAVQTSLFIP VNQPQKSLLL AMFDNRTEFT DPTFYDVSSW NLEQAYHLQL IRNAKLDIDV LSKKRPKPTA FNVDEQAVSL LINWQQDNAA PVLQQLLQAG IRTKFAGKPF TIRVDDIDLA FPAGSLQIPL KQSGNSAETI TTKLTELVKG YPLNITSVNT SSSVSGIDLG SPDFHPVKPI KPLLVTGQGT DASEVGELWY YLDTKLAVPL TLVDVGRLTR LTLSDYSHII LPGGSYSSLD EKFARKLGQF AKLGGTIIAQ KGALTWLNKG HLLKTDLKEA RFYKQLFDST NLSFADREKL EARQSIGGAI LELTLDPTHP LSFGIRGNSL PILKNKALGL TETSTPFIVA AKYAEEPLLS GYLAEEYQRS FSMSPAILLE PRGKGAIVIL ADNLMFRNIW LGSEKIYANA LYFVPALD
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