| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0173 |
|---|
| Symbol | |
|---|
| ID | 5610330 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 195536 |
|---|
| End bp | 197950 |
|---|
| Gene Length | 2415 bp |
|---|
| Protein Length | 804 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640930999 |
|---|
| Product | RNA-binding S1 domain-containing protein |
|---|
| Protein accession | YP_001471914 |
|---|
| Protein GI | 157373314 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2183] Transcriptional accessory protein |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTATCTT TGGCACCACT CAAATCTTTC TATCCAGGCA CGACACAACT TCTTATGCAA
ATGACGCAAA ATATTGCCCA AATCATCGCT CAGGAACTGA ATGTTCGCGA ACAACAAGTC
ACCTCTACTA TCACCTTACT CGATGATGGT GCAACGGTAC CTTTCGTTGC GCGTTACCGA
AAGGAGGCGA CGGGAGGGTT GGATGATACT CAGTTGCGTA CGTTAAATAG CAGGTTGAGT
TACCTGCGTG ATCTGAACGA TAGAAGAGCG GTGATCCTAT CGAGTATCGA TACTCAGGGA
AAACTGACCC CTGAATTGAA AAAAGCCTTG GTCGATGCCG ACAGTAAGAC GCGTTTAGAA
GATCTTTACC TGCCTTACAA GCCTAAGCGT CGCACTAAGG GCCAGATAGC AATCGAAGCG
GGCATCGAGC CTTTGGCTGA TTATTTATTC GGTAACCGAC AGGCAGATAT TGAACTCGAA
GCGGGTAAAT TTATCAATGC AGAAGCGGGG TTTGCCGACA GTAAGTCCGT TCTCGATGGG
GCGCGTTTCA TTATCATGGA GCGTTTTGCT GAGGATGCCG CGCTGCTGCA AAAGGTAAGG
CAACATCTTA GCCAAAACTC TGTGCTCGAG AGCAAGATGG TGAAGGGGAA AGAGAAAGAG
GGCGCGAAAT TCCGTGACTA CTTTGAGCAT ACAGAGAAGC TAAGCAAGAT ACCGTCGCAT
CGTGCATTGG CTATGCTACG CGGTCGAAAT GAGGGAATGC TGAGTTTAAG CATGAATGCC
GACCCGGACA ATGAGTCTAA GCAAAGCAGT TACTGCGCCG TTATCATCGC CGATCACTTT
AAGCTTAACC TGACCGATAG TGCGGTAGAC CAGTGGCTGA AAACCGTAGT CACGGCAACC
TGGCGTATCA AGATCGCACT ACAGATGGAA ACCGAGTTTC TCGCTAAGAT GCGTGAACAG
GCTGAATCTG AGGCAATCAA CGTTTTCGCC AAGAACCTGG GCGATCTTCT GATGGCCGCT
CCTGCAGGAG CCAAGGCCAC ATTAGGGCTA GATCCAGGCC TTAGAAGCGG TGTGAAGGTG
GCTATCGTGA ACAACACGGG TAAGCTGACG GCACATACGA CTATCTTCCC CCATGCTCCA
CAAAACCAAT GGGACAAGTC TGTTCGCACC TTAGCGAACC TTGCCAAGAT GCATAAGGTT
GAGCTGATCG CGGTAGGTAA TGGTACCGCT TCGAGGGAAA CGGATAAGCT GGCGGGAGAG
CTGATCGCCA GTGTGAAAGC CGAGCTACCT GGGTTAACTA AAATTATGGT GAGTGAGGCG
GGAGCCTCGG TCTATTCGGC CTCTGAATTA GCGGCCAATG AATTTCCCGA TCTTGATGTG
TCTATTCGTG GCGCCGTGTC TATCGCCCGC CGTCTACAAG ATCCGCTCGC CGAGCTGGTT
AAGATCGAGC CTAAGTCGAT CGGAGTCGGG CAGTATCAAC ATGATGTCAG TCAGAGCCAA
CTGTCTCAGT CTCTGGAAGG GGTAGTGGAA GACTGCGTTA ACGGTGTTGG CGTCGATCTC
AATATGGCTT CTGCGCCCTT GCTATCACAA GTTGCTGGTT TGAATAAGAC ATTGGCTAGA
AATATTGTGA CTTACCGAGA TGAAAATGGT CAATTTAAAC AGCGTAAGCA GCTACTTAAG
GTTGCTCGTT TAGGCCCTAA AGCCTATGAG CAGGCGGCGG GGTTCCTGCG CATTGTCGAT
GGCGATAACC CGTTAGACGC TTCCTCTGTG CACCCGGAAG CCTATTCGCT GGTGGAATCC
ATTGCTAAGG CAAAAGATCA GGCCTTAGAC ACTTTAATGG GTAACAGTGA ATTGCTACGT
AGCCTGAAGG CTGAAGATTT CATTACCGAA AAATTTGGCC TGCCAACCGT CACAGATATT
CTGACTGAAC TCGACAAACC CGGGCGAGAT CCACGTGGTG AGTTTAAGAC CGCCACCTTT
AAAGAGGGAG TCGAAGAGGT TAAAGATCTT AAACTCGATA TGATCTTAGA GGGTGTGGTG
ACCAATGTGA CTAACTTCGG TGCCTTCGTC GATGTTGGAG TTCACCAGGA TGGATTGGTG
CATATCTCTT CACTGACGGA CAAGTTTGTC AGTGACCCTC ACACCGTCGT TAAGGCGGGT
GATGTAGTGA AGGTCAAGGT GATGCAGGTC GATGTCGAGC GCAAGCGTAT CGGCCTTAGC
ATGCGTCTGG ATGAGAAGGC CGCTGATATG CCTGCTGGTC GTTCTAACCA AAAATCTCAG
ACAGGGTCTA AGCCTGCTGC TAAATCGAAT CAGCAAGGCA AAGGCAAGCC TCAGCATAGA
TCTCAGCCAA AACAGCAAGC CAATGCTGCC ATGGGCAACG CTTTCGCCGA TGCCTTTGCA
AAATTGAAGA AGTAA
|
|---|
| Protein sequence | MLSLAPLKSF YPGTTQLLMQ MTQNIAQIIA QELNVREQQV TSTITLLDDG ATVPFVARYR
KEATGGLDDT QLRTLNSRLS YLRDLNDRRA VILSSIDTQG KLTPELKKAL VDADSKTRLE
DLYLPYKPKR RTKGQIAIEA GIEPLADYLF GNRQADIELE AGKFINAEAG FADSKSVLDG
ARFIIMERFA EDAALLQKVR QHLSQNSVLE SKMVKGKEKE GAKFRDYFEH TEKLSKIPSH
RALAMLRGRN EGMLSLSMNA DPDNESKQSS YCAVIIADHF KLNLTDSAVD QWLKTVVTAT
WRIKIALQME TEFLAKMREQ AESEAINVFA KNLGDLLMAA PAGAKATLGL DPGLRSGVKV
AIVNNTGKLT AHTTIFPHAP QNQWDKSVRT LANLAKMHKV ELIAVGNGTA SRETDKLAGE
LIASVKAELP GLTKIMVSEA GASVYSASEL AANEFPDLDV SIRGAVSIAR RLQDPLAELV
KIEPKSIGVG QYQHDVSQSQ LSQSLEGVVE DCVNGVGVDL NMASAPLLSQ VAGLNKTLAR
NIVTYRDENG QFKQRKQLLK VARLGPKAYE QAAGFLRIVD GDNPLDASSV HPEAYSLVES
IAKAKDQALD TLMGNSELLR SLKAEDFITE KFGLPTVTDI LTELDKPGRD PRGEFKTATF
KEGVEEVKDL KLDMILEGVV TNVTNFGAFV DVGVHQDGLV HISSLTDKFV SDPHTVVKAG
DVVKVKVMQV DVERKRIGLS MRLDEKAADM PAGRSNQKSQ TGSKPAAKSN QQGKGKPQHR
SQPKQQANAA MGNAFADAFA KLKK
|
|---|
| |