Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0168 |
Symbol | ompR |
ID | 5609881 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 190672 |
End bp | 191397 |
Gene Length | 726 bp |
Protein Length | 241 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640930994 |
Product | osmolarity response regulator |
Protein accession | YP_001471909 |
Protein GI | 157373309 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGACAGG AAACCTCTAA AATTCTCGTC GTCGATGATG ATATGAGGCT AAGAGCTTTA CTAGAGCGCT ATCTTATGGA GCAAGGTTAT CAGGTTCGTA GTGCGGCCAA TTCTGAGCAG ATGGATCGAC TGCTGGAACG TGAAAACTTT CACCTTCTTG TACTCGACCT GATGCTTCCC GGTGAAGATG GCTTATCTAT CTGCAGAAGA CTCCGTCAGA CAGGTAATCC CATTCCTATT GTTATGCTTA CAGCCAAAGG GGATGAGGTC GACCGTATCA TTGGCCTCGA GCTTGGAGCC GACGACTACC TGCCTAAACC ATTTAACCCT CGTGAGTTAC TGGCCAGAAT TAAAGCCGTG ATGCGCAGAC AGAGTCAGGA TGTTCCGGGG GCGCCGACTC AGCAGGAGGA GGAGATCACT TTTGGTGAGT TTGCACTCAA TCTGGCTACC CGTGAGATGT ACCACGGCGA GGAAGCTATT TCACTCACCA GTGGTGAATT TGCCGTACTA AAGGTATTGG TGAGTCATCC CCGTGAACCG CTATCGCGTG ATAAGTTAAT GAACTTAGCT CGCGGCCGTG ACTACTCTGC ACTCGAACGT TCTATCGATG TTCAGGTTTC CCGTTTACGA CGCCTGATAG AGAAAGATCC GGCAAATCCA AGATATATTC AAACCGTGTG GGGTCTTGGG TATGTGTTTG TACCCGATGG TGCCGCCCGA CGATGA
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Protein sequence | MGQETSKILV VDDDMRLRAL LERYLMEQGY QVRSAANSEQ MDRLLERENF HLLVLDLMLP GEDGLSICRR LRQTGNPIPI VMLTAKGDEV DRIIGLELGA DDYLPKPFNP RELLARIKAV MRRQSQDVPG APTQQEEEIT FGEFALNLAT REMYHGEEAI SLTSGEFAVL KVLVSHPREP LSRDKLMNLA RGRDYSALER SIDVQVSRLR RLIEKDPANP RYIQTVWGLG YVFVPDGAAR R
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