| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0159 |
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| Symbol | |
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| ID | 5613905 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 181968 |
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| End bp | 182705 |
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| Gene Length | 738 bp |
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| Protein Length | 245 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640930985 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_001471900 |
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| Protein GI | 157373300 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATGCCA TCTGCTGTGG TGGCATTGTC AGCTCTCTGC TTTGGCTTGC GGGCGTAACC
CACAGTTATG CTCAGGTCAC TATTGAGAGG GATGCCAAGC CTCATTATAA AGCCAGTTAC
TCTAAAGAGG GGATATTGGG CAAGTCTTCT ACTGCTCATC CTGCATCCTT CTCTCCTTCG
AAAGAGGCTG AAAACCAGCT AAAGGTATAC CAATACAGGC AGGAGAATGG TGTCATGGCA
TTCTCCGATC ATGCTCCGGG TTCGGCTCAA TATCAGGTGC TGTTATATGA CTGCTATGCA
TGCCAGCCCG ACTCCAGTCT GGATTGGAAG AAAATCCCTC TTTTCTACAG AGACTATGAT
GAGTTAATCA ATCAAGCCGC CAATACCCAT AACCTTGATC CAGCACTCAT TCGGGCGGTT
ATTCACGCCG AATCGGCATT TAAGGTATTT GCCTTGTCCC GAAGCGGCGC CATGGGGCTG
ATGCAACTTA TGCCCGAAAC GGCGAAAGAG TTGGGGGTTA AAAATGCCTT CAAGCCGGAG
CAAAATATCG ATGGCGGGGC AAAATATCTG GCGCAAATGC TGCGACGCTT TGATGGGGAT
ATAGATTTAG CCTGTGCCGC CTACAATGCC GGCCCCATGA ATGTTACCCA TTATAAGGGG
ATCCCGCCTT ACCCCGAGAC CCAAGCCTAC GTTAAACGGG TGAAGATCTT GTTGGAGCGT
TATCGCAAAC CCGGCTAA
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| Protein sequence | MHAICCGGIV SSLLWLAGVT HSYAQVTIER DAKPHYKASY SKEGILGKSS TAHPASFSPS
KEAENQLKVY QYRQENGVMA FSDHAPGSAQ YQVLLYDCYA CQPDSSLDWK KIPLFYRDYD
ELINQAANTH NLDPALIRAV IHAESAFKVF ALSRSGAMGL MQLMPETAKE LGVKNAFKPE
QNIDGGAKYL AQMLRRFDGD IDLACAAYNA GPMNVTHYKG IPPYPETQAY VKRVKILLER
YRKPG
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