| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0153 |
|---|
| Symbol | |
|---|
| ID | 5611133 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 172513 |
|---|
| End bp | 175665 |
|---|
| Gene Length | 3153 bp |
|---|
| Protein Length | 1050 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640930979 |
|---|
| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
|---|
| Protein accession | YP_001471894 |
|---|
| Protein GI | 157373294 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGTT TCTTTATCGA TCGCCCTATC TTCGCCTGGG TGATCGCCAT TATTGTGATG
CTGGCTGGGG TGTTATCTAT CCTGGGTCTA CCAGTGTCGC AATATCCGAG TATCGCACCG
CCATCGGTTG AGATTAGGGC TGTGTATCCG GGAGCATCGG CTAAAACGAT GGAAGATTCG
GTAACTCAGG TTATCGAGCA GCGAATGACA GGGATTGACC ACCTTCGCTA CATCTCATCA
ACCAGTGATA GTTTCGGTAA CGCGACCATC ACTTTAACCT TTAATGCCGA GGCCGATCCG
GATATTGCTC AGGTACAGGT GCAAAACAAG CTTCAGCTTG CAATGCCACT GCTTCCGCAA
GAAGTTCAGG CTCAGGGTGT TAACGTCGCT AAGTCGAGTG CTGGCTTCCT GATGGTTGTG
GGCTTCGTAT CTCAGGATGG CTCACTGGAT AAGAATGATA TCGCTGACTA TGTGGGCTCT
AACGTTCAAG ACCCGATGAG TCGTGTACCT GGTGTGGGGA CGATTCAGTT GTTCGGTGCC
CAGTATGCGA TGCGTATCTG GCTCGACCCA CTGAAACTGA CTCAATACAA CTTGACCAGT
CAAGATATTA TCGCTTCTAT CAGGGAGCAA AATGCGCAGG TTTCTGCTGG ACAACTAGGT
GGGGCGCCGT CGGTTTCCGG CCAGCAGCTG AACGCAACGG TATCGGCACA GAGTCGTCTG
CAGACGGCCG AACAGTTTAA GAAGATCATC ATCAAGGCTG ATTCGACCGG TGCCAAAGTG
TTCCTCGAAG ATGTTGCGCG TGTCGAGTTA GGTGCTGAGA ACTATGATGT AGAGTCTTAC
TATAATGGTA AGCCTGCTGC GGGCATCGGT ATTCAGTTGG CGACAGGTGC TAACGCACTT
GCTACGGCCG AAGGGGTTCG CGCCAAGATT GCCGAATTGC AGCCATTCTT CCCGCAAGGG
TTAGAGGTGG TTTATCCCTA CGATACGACG CCATTTGTTG AGAAATCGAT CGAAGGGGTT
GTGCATACCC TGCTCGAAGC TGTGGTCTTG GTTTTCTTGA TCATGTATCT GTTCCTGCAG
AACTTCCGCG CAACGCTTAT TCCAACGATT GCGGTGCCGG TTGTACTCTT AGGTACGTTT
GCGATCTTGT CGGCTGCCGG CTTCTCGATT AATACCTTAA CCATGTTTGC CATGGTACTG
GCCATTGGCC TGTTGGTCGA TGATGCCATC GTTGTCGTAG AGAACGTCGA GCGAGTGATG
TCCGAAGAGG GACTCAGTCC CATCGAGGCC ACAAAGAAAT CGATGGATCA GATCACCGGG
GCTCTTGTGG GTATCGGCCT GACGCTTTCA GCGGTATTCG TCCCTATGGC ATTTATGTCG
GGGTCGACAG GTGTGATCTA CAGGCAGTTT TCGATAACGA TTGTGTCGGC GATGGCGCTA
TCTGTGATGG TTGCGATCAT CCTGACTCCA GCCTTGTGTG CCACCATGCT CAAGCCCATT
GCTAAGGGGC ACCACGCGGT AGATACCGGC TTCTTCGGTT GGTTTAACCG TAAGTTTGAT
GCATTGACCT CACGTTATGA GGCAAGTGTT GCTGCCATGA TCAAGCGTGC AGGTCGCACC
ATGATGGTTT ATCTGGCTAT TACGGTCGCA GTGGGTTGGA TCTTCATGCG TATGCCAACT
GCCTTCCTGC CCGATGAAGA TCAGGGGATC TTGTTTACTC AGGCTATCTT GCCGGTGAAC
TCGACTCAGG AAGAGACGAA GAAAGTCCTG TCAGATGTGT CGGACTTCTA CCTGGAACAG
GAAGGCGATA ACGTTAAATC AGTATTTAGC GTATCGGGCT TTAGTTTCGC CGGTAACGGT
CAAAACATGG GTATTGCCTT CGTAGGCTTG AAAGATTGGT CCGAGCGAAC CGATCCAGGC
CAAGATGTAC AATCGGTCGC TGGGCGTGCC ATGGGCATGT TTATGCAGAT GAAAGAAGCC
TTCGTGTTTG CCTTTGTACC GCCGGCGGTT ATCGAACTGG GCACCGCTAA CGGTTTTGAT
TTCTATCTGC AGGACAGGAA CGGCCAAGGA CACGATAAAC TGGTCGAAGC ACGAAATATG
TTGTTAGGCA TGGCTGCACA AAACCCTAAC CTTGTGGGCG TACGTCCAAA TGGTCAGGAA
GATGCGCCCA TGTATCAGAT CCATATCGAT CACGGCAAAC TCAGAGCCTT GAGTGTCGAT
ATCGATGCGG TGAACAGCGT GCTGGGTACG GCTTGGGGCG GTAATTACGT CAACGACTTT
ATCGACCGTG GTCGAGTGAA GAAGGTCTAC GTCCAAGGAG AGGCGGATTA CCGCATGCAG
CCTGAAGATA TCGACTCCTG GTATGTTCGA AACACTAAGG GAGATATGGT GCCATTCTCT
GCCTTTGCTA CAGGCTCGTG GGAATATGGT TCACCGCGTC TGGAGCGTTT CAACGGACTA
CCCGCGATGA ATATCCAAGG TGGCGTAGCG CCAGGTTTCA GTACCGGTGA AGCGATGAAC
ATCATCGAAG ATATGGTTAA GCAGTTGCCA CCTGGATTTG GTGTCGAGTG GAACGGTCTC
TCATATGAGG AGCGTCTATC CGGTAATCAG GCGCCAATGC TATATGCACT GTCTATTGTG
GTGGTATTCC TGGTACTGGC AGCGCTGTAT GAGAGTTGGT CTGTACCATT CTCGGTTATT
TTAGTTGTGC CGTTGGGTAT TATCGGTGCG TTGATTGCGA TGAATGGTCG TGGTCTACCT
AACGACGTAT TCTTCCAGGT AGGTCTATTG ACTACGGTAG GTCTCGCGAC GAAGAACGCC
ATCTTGATTG TAGAGTTCGC CAAAGAATAC TACGAGAAAG GTGCGGGATT GGTTGAAGCA
ACGCTGCACG CAGTCCGCGT TCGTTTGCGT CCAATCTTGA TGACATCGCT TGCATTTGGT
CTTGGTGTTG TACCGCTAGC GATTAGTAGC GGTGTAGGTT CAGGAAGTCA AAATGCTATC
GGTACTGCGG TATTGGGCGG CATGATGAGC TCGACCTTTA TGGGGATCTT CTTTATCCCA
ATCTTCTTCG TGATTGTTGA ACGTATCTTC AGCAAACGTG AGAAGAAAGG GGCAAAGCTC
GAGACTAAGG CGGAAACACC AGCAGCAGAA TAG
|
|---|
| Protein sequence | MARFFIDRPI FAWVIAIIVM LAGVLSILGL PVSQYPSIAP PSVEIRAVYP GASAKTMEDS
VTQVIEQRMT GIDHLRYISS TSDSFGNATI TLTFNAEADP DIAQVQVQNK LQLAMPLLPQ
EVQAQGVNVA KSSAGFLMVV GFVSQDGSLD KNDIADYVGS NVQDPMSRVP GVGTIQLFGA
QYAMRIWLDP LKLTQYNLTS QDIIASIREQ NAQVSAGQLG GAPSVSGQQL NATVSAQSRL
QTAEQFKKII IKADSTGAKV FLEDVARVEL GAENYDVESY YNGKPAAGIG IQLATGANAL
ATAEGVRAKI AELQPFFPQG LEVVYPYDTT PFVEKSIEGV VHTLLEAVVL VFLIMYLFLQ
NFRATLIPTI AVPVVLLGTF AILSAAGFSI NTLTMFAMVL AIGLLVDDAI VVVENVERVM
SEEGLSPIEA TKKSMDQITG ALVGIGLTLS AVFVPMAFMS GSTGVIYRQF SITIVSAMAL
SVMVAIILTP ALCATMLKPI AKGHHAVDTG FFGWFNRKFD ALTSRYEASV AAMIKRAGRT
MMVYLAITVA VGWIFMRMPT AFLPDEDQGI LFTQAILPVN STQEETKKVL SDVSDFYLEQ
EGDNVKSVFS VSGFSFAGNG QNMGIAFVGL KDWSERTDPG QDVQSVAGRA MGMFMQMKEA
FVFAFVPPAV IELGTANGFD FYLQDRNGQG HDKLVEARNM LLGMAAQNPN LVGVRPNGQE
DAPMYQIHID HGKLRALSVD IDAVNSVLGT AWGGNYVNDF IDRGRVKKVY VQGEADYRMQ
PEDIDSWYVR NTKGDMVPFS AFATGSWEYG SPRLERFNGL PAMNIQGGVA PGFSTGEAMN
IIEDMVKQLP PGFGVEWNGL SYEERLSGNQ APMLYALSIV VVFLVLAALY ESWSVPFSVI
LVVPLGIIGA LIAMNGRGLP NDVFFQVGLL TTVGLATKNA ILIVEFAKEY YEKGAGLVEA
TLHAVRVRLR PILMTSLAFG LGVVPLAISS GVGSGSQNAI GTAVLGGMMS STFMGIFFIP
IFFVIVERIF SKREKKGAKL ETKAETPAAE
|
|---|
| |