Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0152 |
Symbol | |
ID | 5611132 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 171346 |
End bp | 172503 |
Gene Length | 1158 bp |
Protein Length | 385 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640930978 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001471893 |
Protein GI | 157373293 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGCAAA TAGTGAAAAT TGCCTCTGTT TTAAGTGTGG CGTTATGGAT AACAGCTTGT GGACAAAAAC CTGAACAAGG GCCACAGGAA CGTGGGCCTA TGGAAGTAGG TGTTATAAAA GTAGAGGCGC AGCCTCAATC AATTTTGGTT GAGTTGCCTG GTCGTAGTAA AGCTTATTTG GAAGCGGAAG TTCGTCCTCA AGTCAGCGGT ATCATTATGA CTCGCGGCTT TGTAGAAGGG AGAGATGTTG AAAAAGGTCA ATCCTTATAT CAGATCGATT CATCGACATA CACTGCAGCA CTGATCAGTG CTAAAGCGGA TCTTCAAAGC GCAAAAGCCA ACTTAGTCTC CGCGAAAGCA AAAGCATTAC GTTTTGAAAA ATTGGTCAAG CTTAACTCTA TAAGCGAGCA AGACTATGAT GAAGCCGATG CCGCTTACAA AGCAGCATTA GCAAGAGTTA CAGTTGCTGA AGCGGCGATC AATACTGCAA AGATTAATCT TGAGTACACC GAAGTTCGTG CACCTATTGC CGGGCGTGTG GGCAAGTCTT CAGTGACAGC CGGTGCACTA GTTACTGCAA ATCAAACTCA AACATTAGCG ACCATTCAGC AACTCGATCC CATTAATATC GAGATTGCGC AATCGAGTGC GCAAATGTTA CGTCTGAAAT CTAAGTTAAA ACAGGGCCAA CTCAAGGCGG CTGATAACGC GGGTGTGCAG CTCATTTTGG AAGACGGTAC AACATACAAG CACGATGGTG TGTTGCAGTT CGCTGAAGTG AGTGTGAATG AGGACACGGG TTCCGTTATT TTGCGGGCTG AGTTTCCTAA CCCTGATGGC GTGTTAATGC CTGGCATGTA TGTGCGTGCA GTGCTCAATA CCGGTACCGA TCCAGAAGCG ATTTTAGTAC CCCAAAGAGC TATCACGCGT AATACCAAAG GTGAAGCCGT TGCCATGATT ATCGATGCTG AAGGTAAGGT GGCTGCGCGA GTCGTCACGA CCGCTGAAGT GATCGATCAC CAGTGGCGTA TTACTGATGG TTTAACTGTA GGTGATCAAC TGATTGTTGA AGGTCTGCAA AAAATTCGCC CTGGCGCCGC CGTAAAAGCT GGACCGTTAG TGGCGGATAA GAAATCACAA GCACAACAAC AGAAGTAG
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Protein sequence | MRQIVKIASV LSVALWITAC GQKPEQGPQE RGPMEVGVIK VEAQPQSILV ELPGRSKAYL EAEVRPQVSG IIMTRGFVEG RDVEKGQSLY QIDSSTYTAA LISAKADLQS AKANLVSAKA KALRFEKLVK LNSISEQDYD EADAAYKAAL ARVTVAEAAI NTAKINLEYT EVRAPIAGRV GKSSVTAGAL VTANQTQTLA TIQQLDPINI EIAQSSAQML RLKSKLKQGQ LKAADNAGVQ LILEDGTTYK HDGVLQFAEV SVNEDTGSVI LRAEFPNPDG VLMPGMYVRA VLNTGTDPEA ILVPQRAITR NTKGEAVAMI IDAEGKVAAR VVTTAEVIDH QWRITDGLTV GDQLIVEGLQ KIRPGAAVKA GPLVADKKSQ AQQQK
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