| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0151 |
|---|
| Symbol | |
|---|
| ID | 5611492 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 170152 |
|---|
| End bp | 170910 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640930977 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001471892 |
|---|
| Protein GI | 157373292 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02001] conserved hypothetical protein, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAACCA TGACTATCCA GATGAAACTA CAGCACAAGA TACTTTTAGG CGGGCTACTA
CTCTCCGCAG CTTCATTTGC ACAAGCCGAA AATGAAGGTG AAGTTCTCGG TGGAACAATC
AGTGGAAACC TGACCTTTGC TTCCGATTAT GTGTTCCGTG GCGAGTCAGA AACCATGGAT
GGTGATGTTC CTGTAGTTCA AGGTACACTT GGTTGGGGCA ATGATGATGG TTGGTATGGC
GGCGTTTTTG CGTCAAATAT CAAATTTGCC GATCCCAACC TTGAGATAGT TACCGCGCCT
TATATCGGTA AAGCCGGTGA GTTTGGCGAC AGCGGTATCA CTTATGATGT CATGGTGTTT
TCATATCTTT ATCCGGGTGC CTCATACTCT AACTACACCG AACTCTGGAT GAAGGTCGGT
AAGCAGTTCG GTCAGGCCAA TATTCAACTC GAAGTGACTC CCACGATCGA CGACTGGTTT
GGTGTCGATG GCTGGCAAGG CGTTAACTAC TCAATTCACC CAAGCTATGC ATTCAAAAAC
GGACTGAAAG TATCGGGTTC CGTCGGTTAT CAAGATCTTG ATGGAGACAA TGCGGAAGGA
TGGGGGCACT GGAACTTAGG TGTCAGCAAG GCATTTTACG GCCTGAACTT TGACCTCAGA
TATCATGGCA GTACCGTCGA TGAGACCCAC AAGGTCTACG GTACACAGAC AGAAATTTTT
GATGACCGGG TAGTTATCGG CATCAACAAG AGCTTTTAA
|
|---|
| Protein sequence | MRTMTIQMKL QHKILLGGLL LSAASFAQAE NEGEVLGGTI SGNLTFASDY VFRGESETMD
GDVPVVQGTL GWGNDDGWYG GVFASNIKFA DPNLEIVTAP YIGKAGEFGD SGITYDVMVF
SYLYPGASYS NYTELWMKVG KQFGQANIQL EVTPTIDDWF GVDGWQGVNY SIHPSYAFKN
GLKVSGSVGY QDLDGDNAEG WGHWNLGVSK AFYGLNFDLR YHGSTVDETH KVYGTQTEIF
DDRVVIGINK SF
|
|---|
| |