| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0145 |
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| Symbol | |
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| ID | 5610995 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 163745 |
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| End bp | 165784 |
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| Gene Length | 2040 bp |
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| Protein Length | 679 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640930971 |
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| Product | oligopeptidase A |
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| Protein accession | YP_001471886 |
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| Protein GI | 157373286 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0339] Zn-dependent oligopeptidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.491748 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAACC CTTTGCTTAC CAGCGCAGTG TTACCCCCTT TTTCCAAGAT CAAACCTGAA
CATATTCAAG ACGCCGTTGA GCAGGGTATT GCCAATTGCC GTAGTCAGAT AGAGAAGGTG
CTGGCCCAGC CTCAGCCTTT CACATGGAAT AACCTCATCG CTCCTCTCGA GGAGGTCGAT
GATGAACTGA GCAAGATCTG GTCTCCCATC TCTCACATGA ACTCAGTCGT AAGCAGTGAA
GAGTGGCGCC AGGCCCACGA TGCCTGCCTG CCCCTACTCT CTGAGTACGG CACTTTCGTG
GGACAGCATC AACCTCTCTA CCAAGCCTAT AAGTCGATAA AGGCTTCAGA TGAATTTGAA
CAGCTGACTC AAGCGCAGAA AATGGTGATC GAACATAGCT TACGTGACTT CGAACTTTCC
GGTATCGGAC TCAATGATGC CGACAAGCTG AGGTATGGCG AACTTGTCAA GCGTATGTCA
GAGTTGACCA GTGGCTTCTC GAATCAGCTC CTCGATGCGA CGCAGGCGTG GACCAAGTTG
ATCACCGATG AAGATGAGCT GGCAGGGTTG CCGGAGTCTG CTATTGCAGC GGCTAAAGCC
ATGGCGGCAG CCAAGGAGCA AGAGGGCTGG TTATTTACCT TAGACTTCCC TTCTTATCTG
CCGGTGATGA CCTATAGCGA AAATCGTAAC TTGAGAGAGG AGTGCTATCG CGCGTTTGTG
ACGCGGGCAT CCGATCAGGG ACCATTTGCC GGCAAATATG ATAACGGCCC CTTGATGGAT
GAGATTGTGG CATTGCGTCA TGAGCTGGCA TTACTATTAG GGTTTGATAG CTACGCCCAC
AAATCACTGG CGACCAAGAT GGCACAGACG CCGCAGCAGG TGTTGGAGTT TCTTAATGAA
CTGGCTTCTC GCTCTAAAGA TCAGGGGAAA ACCGAACTTG CCGAGTTGAC CGAGTTTGCC
GGGAAGGAGT TTGGTGCAAC CGATCTTTCT CCTTGGGATC TTAGTTTCTA CGCCGAAAAG
TTAAAGCATC ATAGATATGA GATATCTCAA GAACTGCTTC GCCCTTACTT TCCGGAAGAT
AAGGTTTTAT CAGGGCTTTT CTATACGGTT AATCGCCTGT TTGGCCTGAA GATCACCGAA
CAGAAAGAGT TCGACTCATG GCATAAAGAT GTACGCTTCT TCAGTATCGA AGATAGCGAA
GGCGAGCACA GAGGTAGTTT CTATTTTGAT CTGTACGCCC GTGAAGGCAA GCGCGGCGGT
GCCTGGATGG ATGATTGTCG CGTACGCAGA CAGACCATCT CTGGTATGCA AAATCCGGTG
GCTTATCTAA CCTGTAACTT TAATGCGCCT GTCGATGGTA AACCCGCCCT GTTTACCCAT
GATGAGGTGA CAACCTTATT CCATGAGTTT GGTCATGGCA TCCACCATAT GCTGACCAAA
ATCGATGTCG CCGGGGTATC CGGGATTAAC GGTGTACCTT GGGATGCCGT CGAGCTGCCG
AGTCAATTTA TGGAAAACTG GTGCTTCGAA GAGGAAGCGT TGGCAGAGAT CTCCGGTCAC
TTTGAAACCG GTGAGCCCTT GCCGAAGGTT ATGCTCGATA AGATGCTGGC GGCGAAGAAT
TTTCAATCCG GCATGGGAAT GTTACGCCAG TTGGAGTTTT CACTCTTCGA TTTCAGAATG
CACTTAGAAT ATAGCCCTGA AAAAGGTGCA AATATTCAGG CAAAGCTGGA TGAAGTGCGA
AGCCAGGTGG CTGTGATCAC GGCGGCTGAC TTTAACCGTT TCCAGCACAG TTTCGCTCAT
ATCTTTGCTG GTGGATATGC TGCCGGTTAT TACAGTTATA AATGGGCTGA AGTCTTGTCT
GCAGATGCAT TTTCTCGTTT CGAGGAGGAG GGCATATTTA ACAGCGAGAC AGGTCTTAGC
TTCCTGAACA ACATTTTAGA GATGGGAGGA AGTGAGGAGC CGATGGAGCT GTTTAAGCGT
TTCCGTGGTC GTGAGCCTCG TATCGATGCA CTACTTCGTC ACTCAGGCAT TAATGGCTGA
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| Protein sequence | MSNPLLTSAV LPPFSKIKPE HIQDAVEQGI ANCRSQIEKV LAQPQPFTWN NLIAPLEEVD
DELSKIWSPI SHMNSVVSSE EWRQAHDACL PLLSEYGTFV GQHQPLYQAY KSIKASDEFE
QLTQAQKMVI EHSLRDFELS GIGLNDADKL RYGELVKRMS ELTSGFSNQL LDATQAWTKL
ITDEDELAGL PESAIAAAKA MAAAKEQEGW LFTLDFPSYL PVMTYSENRN LREECYRAFV
TRASDQGPFA GKYDNGPLMD EIVALRHELA LLLGFDSYAH KSLATKMAQT PQQVLEFLNE
LASRSKDQGK TELAELTEFA GKEFGATDLS PWDLSFYAEK LKHHRYEISQ ELLRPYFPED
KVLSGLFYTV NRLFGLKITE QKEFDSWHKD VRFFSIEDSE GEHRGSFYFD LYAREGKRGG
AWMDDCRVRR QTISGMQNPV AYLTCNFNAP VDGKPALFTH DEVTTLFHEF GHGIHHMLTK
IDVAGVSGIN GVPWDAVELP SQFMENWCFE EEALAEISGH FETGEPLPKV MLDKMLAAKN
FQSGMGMLRQ LEFSLFDFRM HLEYSPEKGA NIQAKLDEVR SQVAVITAAD FNRFQHSFAH
IFAGGYAAGY YSYKWAEVLS ADAFSRFEEE GIFNSETGLS FLNNILEMGG SEEPMELFKR
FRGREPRIDA LLRHSGING
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