Gene Ssed_0141 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0141 
Symbol 
ID5611680 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp159371 
End bp160315 
Gene Length945 bp 
Protein Length314 aa 
Translation table11 
GC content49% 
IMG OID640930967 
Producthypothetical protein 
Protein accessionYP_001471882 
Protein GI157373282 
COG category[S] Function unknown 
COG ID[COG2855] Predicted membrane protein 
TIGRFAM ID[TIGR00698] conserved hypothetical integral membrane protein 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones62 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACTCG GCACCATATC TTTTCAGACA GTAAAGCGTC ACCTTCCCTT TTTCTTAATT 
GCTGTCCTAT GTTTACTTCC CGTGATTTCA TCACCCATAG CCTTGGTATT GGGTTTCACT
TTAGCCAGCT TGGGCCTGAT CCCCGATGAG ATCGATCTGG GCAAGAGCAC TAAACGTCTC
CTCTCTTACT CAATTATCGG CCTGGGATTC GGTATTCAGC TACAAACCGC CATATCGGCG
AGTATGCAGA ACCTACCTCT GATCCTCGGC TCTATCATCT TCACCTTGCT CTTAGGTTTT
ATACTGACAA AAGCACTCAA GTTCGACACC AAAACAGGAC ACCTGATCTC TGCAGGTACG
GCTATCTGTG GGGGAAGTGC TATCGCCGCC GTCGCACCAG CAATCAACGC CAAGAGCGAA
CAGTCGGCCA TCGCACTCGC CACCGTATTT ATTTTAAACT CGGTGGCACT CTTTCTGTTT
CCTGCCCTGG GTCATCTCTT TTCCATGAGC CAATATGACT TTGGCGTCTG GAGCGCTATC
GCGATTCATG ACACCTCTTC GGTGGTGGGA GCAGCGTCGG CTTACGGTGA AGAGGCATTG
ACTACGGCAA CAACGATTAA ATTGGCTCGT GCATTATGGA TCATTCCGAT AGCCCTACTC
AGTGCCATGG CATTTGGTGG TGACAAGAAA CGGATCACCA TCCCTTATTT CATCGGTTTC
TATTGTCTGG CAATTGCCAT CGCTCACTAC TTCCCTCAAG GACAGGCTGT CTATGAAGTA
CTGTTTGAAT TATCAAAGCG CGTTCTGGTG CTTTGCCTGT TCCTGATAGG CGCGGGGATC
ACTGTGAGAA AAATGCGGGC GGCAGGCCCT AAGCCTCTGC TTTTAGGGGT TCTTTTATGG
TTATCGATCG GAACGAGTTC GTTACTCTAC ATTCTCTATC TCTAA
 
Protein sequence
MKLGTISFQT VKRHLPFFLI AVLCLLPVIS SPIALVLGFT LASLGLIPDE IDLGKSTKRL 
LSYSIIGLGF GIQLQTAISA SMQNLPLILG SIIFTLLLGF ILTKALKFDT KTGHLISAGT
AICGGSAIAA VAPAINAKSE QSAIALATVF ILNSVALFLF PALGHLFSMS QYDFGVWSAI
AIHDTSSVVG AASAYGEEAL TTATTIKLAR ALWIIPIALL SAMAFGGDKK RITIPYFIGF
YCLAIAIAHY FPQGQAVYEV LFELSKRVLV LCLFLIGAGI TVRKMRAAGP KPLLLGVLLW
LSIGTSSLLY ILYL