Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0141 |
Symbol | |
ID | 5611680 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 159371 |
End bp | 160315 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640930967 |
Product | hypothetical protein |
Protein accession | YP_001471882 |
Protein GI | 157373282 |
COG category | [S] Function unknown |
COG ID | [COG2855] Predicted membrane protein |
TIGRFAM ID | [TIGR00698] conserved hypothetical integral membrane protein |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 62 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACTCG GCACCATATC TTTTCAGACA GTAAAGCGTC ACCTTCCCTT TTTCTTAATT GCTGTCCTAT GTTTACTTCC CGTGATTTCA TCACCCATAG CCTTGGTATT GGGTTTCACT TTAGCCAGCT TGGGCCTGAT CCCCGATGAG ATCGATCTGG GCAAGAGCAC TAAACGTCTC CTCTCTTACT CAATTATCGG CCTGGGATTC GGTATTCAGC TACAAACCGC CATATCGGCG AGTATGCAGA ACCTACCTCT GATCCTCGGC TCTATCATCT TCACCTTGCT CTTAGGTTTT ATACTGACAA AAGCACTCAA GTTCGACACC AAAACAGGAC ACCTGATCTC TGCAGGTACG GCTATCTGTG GGGGAAGTGC TATCGCCGCC GTCGCACCAG CAATCAACGC CAAGAGCGAA CAGTCGGCCA TCGCACTCGC CACCGTATTT ATTTTAAACT CGGTGGCACT CTTTCTGTTT CCTGCCCTGG GTCATCTCTT TTCCATGAGC CAATATGACT TTGGCGTCTG GAGCGCTATC GCGATTCATG ACACCTCTTC GGTGGTGGGA GCAGCGTCGG CTTACGGTGA AGAGGCATTG ACTACGGCAA CAACGATTAA ATTGGCTCGT GCATTATGGA TCATTCCGAT AGCCCTACTC AGTGCCATGG CATTTGGTGG TGACAAGAAA CGGATCACCA TCCCTTATTT CATCGGTTTC TATTGTCTGG CAATTGCCAT CGCTCACTAC TTCCCTCAAG GACAGGCTGT CTATGAAGTA CTGTTTGAAT TATCAAAGCG CGTTCTGGTG CTTTGCCTGT TCCTGATAGG CGCGGGGATC ACTGTGAGAA AAATGCGGGC GGCAGGCCCT AAGCCTCTGC TTTTAGGGGT TCTTTTATGG TTATCGATCG GAACGAGTTC GTTACTCTAC ATTCTCTATC TCTAA
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Protein sequence | MKLGTISFQT VKRHLPFFLI AVLCLLPVIS SPIALVLGFT LASLGLIPDE IDLGKSTKRL LSYSIIGLGF GIQLQTAISA SMQNLPLILG SIIFTLLLGF ILTKALKFDT KTGHLISAGT AICGGSAIAA VAPAINAKSE QSAIALATVF ILNSVALFLF PALGHLFSMS QYDFGVWSAI AIHDTSSVVG AASAYGEEAL TTATTIKLAR ALWIIPIALL SAMAFGGDKK RITIPYFIGF YCLAIAIAHY FPQGQAVYEV LFELSKRVLV LCLFLIGAGI TVRKMRAAGP KPLLLGVLLW LSIGTSSLLY ILYL
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