| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0132 |
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| Symbol | |
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| ID | 5612278 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 148659 |
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| End bp | 150035 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640930958 |
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| Product | ABC transporter related |
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| Protein accession | YP_001471873 |
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| Protein GI | 157373273 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATGG TTTGTTCAGA TATGAATTTA CTGGAATTAG ATAGAGTTAG TTTCCGTTAT
CACAGTGACT CGCCTCTAGT GTTGAATGAA GCGAGTTTGG CTATTCGCAA GGGGGAATGT
CACTGCATTA GCGGGCCTAC CGGTTCAGGA AAATCGAGTC TTCTTAACCT TATTGTGGGG
TGCCTTTCCA GACCCTTCGA AGGCGAGCTT CATATCGCCG ATGGTGTTGT GCTTGGCTTA
GTGATGCAGG ATCCAAATGT GCAGTTTATC CGGCAGAGTG TCGGTGCTGA AGTTGCCTTT
GCGTTAGAAA ATCTGGCAGT CCCCTATGAT CTTATGGTCG GTAAGGTTCA AGCAGCATTA
AGAAAAGTGG GGTTATACGT CAGTTTAGAT ATGCCCATTG AGCAGCTATC ACTCGGACAA
AAGTATCGTT TGATGATCGC GGCTCAATTG GTATATGAAC CCGATATTTT GCTGCTGGAT
GAGCCTTGGG CTCAACTCGA TGATATGGGT GTCGATGAAC TCATGTCAGT CTTGAGGCTA
CTCAAGTCCG ATAACGTTGC CATCGTTTTG GTTGAGCACA ACCCTGCGGC TTTCAGTGAT
CTTGTGGATC ATTTTTGGCA ATTAAAAGAT GGCAAGATGA CGTCAGGGTG TTTCCAGTCA
GCTCCAATTT CATTCACCAG ACCCGGATAC ATTCCCGTTG GGGAAAGTGT ACTGGCTTTC
GAGCCTTTTG AATTTTGTTT TGAAGATCAA AGCCCACTAT TTGTATGCCA TGACCATCTT
GAGTTGTTTG AAGGTGAGAT CGTCGCTTTG GTCGGCGACA ATGGTGCAGG TAAGAGTAGT
CTATTGAAGA GTATTGCAGG GATACAGTCT AATGTCAGAG CGTTACCTCT GGCAGTATTG
GGTAAGCAAC CGAAGCTTGG TATCTTCGGC GGTGAACTGG GCTTATTACT TCAGCGTCCA
AATCGTCAGC TTTTTGAAAA TACTGTGTTG GAGGAGATGC AATTTAGCCT TAAACGCTTC
GGTTTACCGC TGGAAAATGC CGATAGACTA TTGCGTGAAA TGGGATTAGA GGACCTTAAA
TCTCATTCTC CTCATACCTT ATCTTACGGG CAGCAACATC TGGTCGCTCT GGCATCTCTT
GCCTCGTTGA AGCCGAAAGT ATTGCTGCTT GATGATCCGC TTGCAGGCTT GGACCAGGCA
TTTTACTGCA GAGTTTGGCA GGTGTTGGTC AGCTTAAGTC AGCAAGGTAC GGCCATCTTA
TTTAGCAGCC ATAGGCAGAT GAATCATATG CCGGTGACGC GATCATGGCA GTTATCCGAT
GGTCTCCTAT ATGACGACTT GTCTTTGGCT GGTGTGGAGA GTGTGAGTGC GGGCTAA
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| Protein sequence | MDMVCSDMNL LELDRVSFRY HSDSPLVLNE ASLAIRKGEC HCISGPTGSG KSSLLNLIVG
CLSRPFEGEL HIADGVVLGL VMQDPNVQFI RQSVGAEVAF ALENLAVPYD LMVGKVQAAL
RKVGLYVSLD MPIEQLSLGQ KYRLMIAAQL VYEPDILLLD EPWAQLDDMG VDELMSVLRL
LKSDNVAIVL VEHNPAAFSD LVDHFWQLKD GKMTSGCFQS APISFTRPGY IPVGESVLAF
EPFEFCFEDQ SPLFVCHDHL ELFEGEIVAL VGDNGAGKSS LLKSIAGIQS NVRALPLAVL
GKQPKLGIFG GELGLLLQRP NRQLFENTVL EEMQFSLKRF GLPLENADRL LREMGLEDLK
SHSPHTLSYG QQHLVALASL ASLKPKVLLL DDPLAGLDQA FYCRVWQVLV SLSQQGTAIL
FSSHRQMNHM PVTRSWQLSD GLLYDDLSLA GVESVSAG
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