| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0125 |
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| Symbol | |
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| ID | 5612310 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 138433 |
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| End bp | 139866 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640930951 |
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| Product | two component, sigma54 specific, Fis family transcriptional regulator |
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| Protein accession | YP_001471866 |
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| Protein GI | 157373266 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.261206 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCTAG AATCACCATT AAATGAGTCA AAATGTCCTA AAGAAGACAA TATGAGCCAA
AATAAAAAAG ATTTGAAACC CCTTCCTTCC GCCGTATCTG TGCTTATTGT AGATGATGAG
CCCGGTATGC GTAGCTTTCT GAAAAAGGCG CTCTCTAAAA AATTCGCTCT GGTCGAGACC
GCCTCCAGCG TCGAGGACGC AGAACAGTTA AGAAGTCGAT GCCATTTTGA CCTCTTGGTC
GTGGATATTC GTCTACCTGG TCGTTCCGGA ATTGAATGGC ATGAAGCATT AAATGATCAG
GAGAGACGCT CGGACATCAT CTTTATGACG GGTTATGCGG ATATGGATGT TGCTATCAAG
GCACTAAGAG CCGGAGCATC AGACTTTATC ATGAAGCCAT TTCATCTTGA GCAGATGATG
AAAGCGGTCG ATCGCTGTAT CGAACGTCGT TTGCTCAAGC GTGAAAACTT GATGCTGCGT
CGTGAAGTCT CTATTGGCCA GTCCTCTACT ATTATCGGTA GTAGCGATGC CATGCAAGAG
GTGAAGCATG TCATCGAACG TGTAGCGCCA ACGAATGCCG TGATCTTAAT TGAAGGCGAG
TCGGGTACGG GTAAAGAGTT AGTCGCGAGA CAATTGCATC TGCTGAGTGG ACGCCAAGGG
CCTTTTGTTC CGGTTAATTG TGGTGCTATT GCGCCGGAAC TTCTTGAGAG TGAGCTCTTT
GGTCATGCGG CCGGTGCCTT TACCGGAGCG AAGGGCAATC GTGAGGGCCT GTTTAGCTTT
GCCTCCGGTG GCACAATCTT TCTCGATGAG ATCGGTGAGA TGCCTCTTAA GATGCAGACG
GCTCTACTTA GGGTTCTGGA GCAGAGAACG ATCCGTCCCG TCGGTAGTGA GAAAGAGACA
AATATTGATG TCCGGGTATT GGCGGCAACA AACCGTAAGC TCGCGGAAGA GGTCGAAGAG
GGTAACTTCA GACGAGACCT TTATTACCGT TTGAATGTGT TAGATATCGT GATCCCTCCT
CTCAGAGATA GGCCGGAAGA TGTCGTTGAA TTAACACATC ACTTTACCAG GCAGTTGGCG
TCTGAACTCG GTGTTAAAGA GGTCGTTTGG AGCCATGAAG ATATGCTGAA ATTACAACAG
CATGAGTGGC CTGGAAATAT CCGTGAACTG AGAAACATGA TTGAGCGCTG TATCTTACTG
GGTAAGCCTC CTGCGGAGTA TTGGAAGCAG CAGCCAAAAT CTGACATGCC CAATGAATCG
GGTTATCCAT TAGATTGGGG ACTAAAGGAG GTTGAAAAAC ATCACGTTAC TCAAGTCGTC
GACCTTCACA ATGGCAATAA ATCTGCCGCG GCGAGGGATC TAGGGGTTTC GCGGAAAACT
TTAGATAGGA AGTATAAAGA GTGGTTCGAT ACCGATAAAC AAGAGGAGAG TTAA
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| Protein sequence | MMLESPLNES KCPKEDNMSQ NKKDLKPLPS AVSVLIVDDE PGMRSFLKKA LSKKFALVET
ASSVEDAEQL RSRCHFDLLV VDIRLPGRSG IEWHEALNDQ ERRSDIIFMT GYADMDVAIK
ALRAGASDFI MKPFHLEQMM KAVDRCIERR LLKRENLMLR REVSIGQSST IIGSSDAMQE
VKHVIERVAP TNAVILIEGE SGTGKELVAR QLHLLSGRQG PFVPVNCGAI APELLESELF
GHAAGAFTGA KGNREGLFSF ASGGTIFLDE IGEMPLKMQT ALLRVLEQRT IRPVGSEKET
NIDVRVLAAT NRKLAEEVEE GNFRRDLYYR LNVLDIVIPP LRDRPEDVVE LTHHFTRQLA
SELGVKEVVW SHEDMLKLQQ HEWPGNIREL RNMIERCILL GKPPAEYWKQ QPKSDMPNES
GYPLDWGLKE VEKHHVTQVV DLHNGNKSAA ARDLGVSRKT LDRKYKEWFD TDKQEES
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