Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0109 |
Symbol | |
ID | 5612856 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 122793 |
End bp | 123821 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640930935 |
Product | glycosyl transferase family protein |
Protein accession | YP_001471850 |
Protein GI | 157373250 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0859] ADP-heptose:LPS heptosyltransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCTTAA AACTTAATAA GATTAACTCC CTATGTCTGT TGCGTTTATC CGCCATCGGC GATGTATGCC ATGCTGTGGC TATGGTGCAG GCGATACAGA GAAAATACCC GGCACTTAAG ATAACCTGGG TGATAGGCAA GGTTGAGTAT CAATTGCTTA AGCATCTTGA GGGGGTTGAG TTTGTTATTT TTGACAAGTC ACAGGGTTGG CGCAGCTATT TCAATTTAAG AAAGGCATTA GCGGGGCAGA GGTTTGATGT GCTGCTACAT ATGCAAGTGG CCTTGAGAGC GACTATAGCC TCACTGGCAA TATCTGCCAA GGTTCGAATC GGCTTCGATC GTTTCAGGGC TAAAGAGGGG CAGTGGTTAG TGACAAATCA CAAGGTTGAG CCGCAAGAGA CGCCACATGT GCTTGAAGGC TTTATGGGGT TCGCTAAGGC GCTTGGTGTT ACCGATCTCT CTCCGAAATG GAATATTCCG GTTCCGTCAG CCGATACCGA GTTTGCCCAG AAGATGATCC CAGATGGCGA TAAAACCTTA GTTATCTGTG CTGCGGCGAG TAAGGCTGAA CGTAACTGGT TACCAGAACG CTACGCCGCT GTGGCTGAAC ATGCGATATC AAGAGGTTGT AGAGTAATGC TTTGTGGTGG GCCCGTACCC TTGGAAATAG AGTTAGCAGA AGCTATCGAG CGAGCTTGTT CTCAGCCCCT TGAAAATCAA GTCGGTAAGA CCTCGTTGAC TCAGCTGTTA GCTATCTTGA AGCAAGCCGC AATTGTATTG GCCCCCGATA CCGGTCCAGC CCACATGGCA GTGACTCAAG GTACGCCAGT AATAGGGCTT TATGCGCACT CAAATTCTGG AAGGACGGGG CCCTATTTTA GCTTAGATAC AGTTGTCAGC GTCTACGATG AGGTTATCGC AGAGCAAGTC GATAGCCCCG TATGGGGAAC GCGAGCCAAG GGCGAGCATT TAATGGCGAA GATTGAAGTG ACCCCAGTTA TCAGCCAACT AGATAAGTTA CTCAGTTAA
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Protein sequence | MSLKLNKINS LCLLRLSAIG DVCHAVAMVQ AIQRKYPALK ITWVIGKVEY QLLKHLEGVE FVIFDKSQGW RSYFNLRKAL AGQRFDVLLH MQVALRATIA SLAISAKVRI GFDRFRAKEG QWLVTNHKVE PQETPHVLEG FMGFAKALGV TDLSPKWNIP VPSADTEFAQ KMIPDGDKTL VICAAASKAE RNWLPERYAA VAEHAISRGC RVMLCGGPVP LEIELAEAIE RACSQPLENQ VGKTSLTQLL AILKQAAIVL APDTGPAHMA VTQGTPVIGL YAHSNSGRTG PYFSLDTVVS VYDEVIAEQV DSPVWGTRAK GEHLMAKIEV TPVISQLDKL LS
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