| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0108 |
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| Symbol | |
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| ID | 5612688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 122040 |
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| End bp | 122612 |
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| Gene Length | 573 bp |
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| Protein Length | 190 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640930934 |
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| Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
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| Protein accession | YP_001471849 |
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| Protein GI | 157373249 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
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| TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGTCA TCGACACCCC CATTGCAGAT CTCAAGATTA TCGAACCCAA TCTATTTGGC
GATGAGAGAG GTTTCTTCTT CGAGTCATTT CGGGACTCCT GGTTCAGGGA GCATGTCAGT
GATGTTCACT TTGTTCAGGA AAACCACAGT AGATCCAAGC GAGGGATATT GAGGGGGCTG
CACTATCAAT CCAGCCAGAC TCAGGGAAAA CTGGTGCGTG TCATCTCCGG AGAGGTTTTC
GATGTAGCCG TCGATCTGCG CAGAGAGAGC ACCACATACG GACAGTGGTT CGGTACCTAC
CTTAGCGAAG AAAACAGACG CCAACTCTGG ATCCCGGCAG GGTTTGCCCA CGGCTTCTAT
GTCATCTCAG AATCGGCAGA CTGTATCTAT AAATGTACCG ATTACTACGC GCCGGAGTTC
GAAAAAACCA TCATCTGGAA CGATACTGAG TTATCGGTAG ATTGGCCACT CTCCAGAGTC
AACAGATCGA AGACCGACGA CATAGCGCAG CCCATACTGT CGGCAAAGGA CAGCGCGGGG
CTAGCATTTA ACAGTCGGGA GCACTGGCTA TGA
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| Protein sequence | MKVIDTPIAD LKIIEPNLFG DERGFFFESF RDSWFREHVS DVHFVQENHS RSKRGILRGL
HYQSSQTQGK LVRVISGEVF DVAVDLRRES TTYGQWFGTY LSEENRRQLW IPAGFAHGFY
VISESADCIY KCTDYYAPEF EKTIIWNDTE LSVDWPLSRV NRSKTDDIAQ PILSAKDSAG
LAFNSREHWL
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