Gene Ssed_0102 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0102 
Symbol 
ID5612954 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp115044 
End bp115700 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content47% 
IMG OID640930928 
ProductTetR family transcriptional regulator 
Protein accessionYP_001471843 
Protein GI157373243 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.478027 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACCC GCGATAAAAT TATCTATACC AGCTTGGAGC TGTTTAACGA ACACGGTGAA 
AGGAATATCA CTACCAATCA TATCGCAGCG CACCTGGGGA TCAGCCCGGG TAACCTCTAT
TACCACTTCC GTAATAAAGA GGACATTATT CGTTCCATTT TTGCCCTGTA CCATGATCAC
CTCGAGTCAG GATTCCAGCC CTACGAGGGT GAGCCTATCA GCATTGAGCT CCTCATCAAT
TACTTTGATG CTATGTTCTA TGCGATGTGG GAGTTTCGTT TCATGTACGC GAATCTGTCC
GACATTCTAA GCCGTGATGA GGAACTTAAA AAACTCTATC TAGCCGCTCA GAAACAGGTG
CTTACCCGTA GCAGCCAGAT CTTGATCAAG CTGAATCAGG ATGGAGTCCT CTCGATAGAA
CAGGATGAGA TCATCCCTCT TACCGAAACG ATGAAGATGA TTGTCAGCTT CTGGATTGGC
TACAAACAGA TCCACTCTAT CGATACCCGT ATCACCAAGA CATCACTCTA TGAAGGCCTG
CTTAGGTTAT TAATGATTGC GAAAGCCTAT TCGACTCCCG ATTCACGGGC AACCTTTGTT
CGGCTCGAGC AACATTACCG TAGACTGGCC GCATCGCCAA CCGCACAGAG CGTCTGA
 
Protein sequence
MKTRDKIIYT SLELFNEHGE RNITTNHIAA HLGISPGNLY YHFRNKEDII RSIFALYHDH 
LESGFQPYEG EPISIELLIN YFDAMFYAMW EFRFMYANLS DILSRDEELK KLYLAAQKQV
LTRSSQILIK LNQDGVLSIE QDEIIPLTET MKMIVSFWIG YKQIHSIDTR ITKTSLYEGL
LRLLMIAKAY STPDSRATFV RLEQHYRRLA ASPTAQSV