Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0102 |
Symbol | |
ID | 5612954 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 115044 |
End bp | 115700 |
Gene Length | 657 bp |
Protein Length | 218 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640930928 |
Product | TetR family transcriptional regulator |
Protein accession | YP_001471843 |
Protein GI | 157373243 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.478027 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACCC GCGATAAAAT TATCTATACC AGCTTGGAGC TGTTTAACGA ACACGGTGAA AGGAATATCA CTACCAATCA TATCGCAGCG CACCTGGGGA TCAGCCCGGG TAACCTCTAT TACCACTTCC GTAATAAAGA GGACATTATT CGTTCCATTT TTGCCCTGTA CCATGATCAC CTCGAGTCAG GATTCCAGCC CTACGAGGGT GAGCCTATCA GCATTGAGCT CCTCATCAAT TACTTTGATG CTATGTTCTA TGCGATGTGG GAGTTTCGTT TCATGTACGC GAATCTGTCC GACATTCTAA GCCGTGATGA GGAACTTAAA AAACTCTATC TAGCCGCTCA GAAACAGGTG CTTACCCGTA GCAGCCAGAT CTTGATCAAG CTGAATCAGG ATGGAGTCCT CTCGATAGAA CAGGATGAGA TCATCCCTCT TACCGAAACG ATGAAGATGA TTGTCAGCTT CTGGATTGGC TACAAACAGA TCCACTCTAT CGATACCCGT ATCACCAAGA CATCACTCTA TGAAGGCCTG CTTAGGTTAT TAATGATTGC GAAAGCCTAT TCGACTCCCG ATTCACGGGC AACCTTTGTT CGGCTCGAGC AACATTACCG TAGACTGGCC GCATCGCCAA CCGCACAGAG CGTCTGA
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Protein sequence | MKTRDKIIYT SLELFNEHGE RNITTNHIAA HLGISPGNLY YHFRNKEDII RSIFALYHDH LESGFQPYEG EPISIELLIN YFDAMFYAMW EFRFMYANLS DILSRDEELK KLYLAAQKQV LTRSSQILIK LNQDGVLSIE QDEIIPLTET MKMIVSFWIG YKQIHSIDTR ITKTSLYEGL LRLLMIAKAY STPDSRATFV RLEQHYRRLA ASPTAQSV
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