| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0101 |
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| Symbol | |
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| ID | 5612914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 113194 |
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| End bp | 114387 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640930927 |
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| Product | 2-amino-3-ketobutyrate coenzyme A ligase |
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| Protein accession | YP_001471842 |
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| Protein GI | 157373242 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0156] 7-keto-8-aminopelargonate synthetase and related enzymes |
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| TIGRFAM ID | [TIGR00858] 8-amino-7-oxononanoate synthase
[TIGR01822] 2-amino-3-ketobutyrate coenzyme A ligase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.396382 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGACAACGA CCTCATTCTA CAACCAGATC AATCAACAGC TCGCTGACGT TAAAGCCGAA
GGCTTATACA AGAGTGAGCG CGTAATCGTC TCTCCTCAGC AAACCGAAAT TAGGGTCAAT
GGAACCGAAG TGATGAACTT CTGTGCCAAT AACTACCTTG GTCTTGCCAA CCACCCAGAG
CTGATAAAAG CGGCTCAAGC CGGTTTGAAT GACCATGGTT TTGGTATGGC TTCAGTTCGT
TTTATTTGTG GTACCCAAGA TATTCATAAG CAACTCGAAT CTAGCCTGAG TGAATTTTTA
GGCATGGAAG ACACGATTCT TTACTCTTCA TGCTTCGATG CGAATGCGGG TCTTTTTGAA
ACACTACTAA GTGCCGAAGA CGCCATCATC TCAGATGCCC TTAATCATGC TTCAATTATT
GACGGAGTAC GCCTCTGTAA GGCTAAGCGC TTCCGTTACG CCAACAACGA TATGGCCGAT
CTAGAAGCTC AACTTAAGGC CGCAAAAGAA GCCGGTGCCC GTAACATCAT GATTGCTACC
GATGGGGTAT TCTCGATGGA TGGCGTTATA GCCAACCTGA AGGGTGTCTG TGATCTCGCC
GATAAATACG GTGCGCTCGT TATGGTCGAT GACTCTCATG CGGTAGGTTT CATTGGAGCC
AATGGTCGTG GCACACATGA ATATTGCGAA GTGATGGATC GCGTCGATAT TATCACCGGT
ACCTTAGGTA AGGCCTTAGG CGGTGCATCG GGTGGATTTA CATCGGCTAA AAAAGAGGTG
GTTGATTGGT TACGTCAACG CTCTCGTCCA TACCTATTCT CTAATTCTTT AGCTCCTTCT
ATTGTCACGG CATCGATTCA TGTACTCGAA ATGCTCAAGT CAGGACAGGC ACTACGTGAA
GCCGTTTGGG AAAATAGTCG TTACTTCCGT GAAAAAATGA CCGAAGCAGG CTTTACTTTA
GGTGGTGCAG ATCATGCAAT TATCCCGGTA ATGATTGGCG ATGCTAAACT AGCTGGTGAC
TTCGCAAACC GACTACTCGA AGAAAATATC TATGTCGTCG GTTTCTCATT CCCGGTTGTA
CCTAAGGGAC AAGCGCGTAT CCGCACTCAG ATGTCTGCGG CTCACACTAA AGCACAGATA
GACAGAGCTA TCGAGGCGTT TACTCGTATA GCCAAAGAGA TGGGTATCAT TTAA
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| Protein sequence | MTTTSFYNQI NQQLADVKAE GLYKSERVIV SPQQTEIRVN GTEVMNFCAN NYLGLANHPE
LIKAAQAGLN DHGFGMASVR FICGTQDIHK QLESSLSEFL GMEDTILYSS CFDANAGLFE
TLLSAEDAII SDALNHASII DGVRLCKAKR FRYANNDMAD LEAQLKAAKE AGARNIMIAT
DGVFSMDGVI ANLKGVCDLA DKYGALVMVD DSHAVGFIGA NGRGTHEYCE VMDRVDIITG
TLGKALGGAS GGFTSAKKEV VDWLRQRSRP YLFSNSLAPS IVTASIHVLE MLKSGQALRE
AVWENSRYFR EKMTEAGFTL GGADHAIIPV MIGDAKLAGD FANRLLEENI YVVGFSFPVV
PKGQARIRTQ MSAAHTKAQI DRAIEAFTRI AKEMGII
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