Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0100 |
Symbol | tdh |
ID | 5612913 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 112132 |
End bp | 113157 |
Gene Length | 1026 bp |
Protein Length | 341 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640930926 |
Product | L-threonine 3-dehydrogenase |
Protein accession | YP_001471841 |
Protein GI | 157373241 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
TIGRFAM ID | [TIGR00692] L-threonine 3-dehydrogenase [TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.173553 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCAC TGAGTAAGTT AAAGCCAGAA GAGGGTATCT GGATGGTCGA TGCTCCCAAG CCGGAGATGG GCCATAACGA CCTGTTAATA AAGATCAGAA AAACGGCTAT CTGTGGTACC GATATCCATA TCTATAACTG GGATGAGTGG TCACAAAAAA CCATTCCGGT ACCTATGGTG GTTGGGCATG AATATGTTGG TGAAGTCATC GATATGGGCA TTGAAGTACG TGGTTTCGAT GTCGGAGACC GCGTTTCCGG TGAAGGTCAT ATTACCTGTG GTCATTGCCG TAACTGTCGA GGCGGACGAA CTCATCTTTG TCGCAATACT TCCGGAGTCG GCGTCAACCG TGATGGGGCT TTTGCAGAAT ATTTAGTTAT TCCGGCATTC AATGCCTTTA AAATTCCTGA TGATATCTCA GATGATCTCG CCTCTATCTT CGATCCATTT GGTAATGCAG TGCATACGGC ACTCTCTTTC GATTTGGTCG GGGAGGATGT GTTAATCACA GGTGCAGGTC CTATCGGGAT CATGGCTGCC GCCGTTTGTC GTCATGTTGG CGCTCGCCAC GTGGTGATCA CGGACGTCAA TGAATACCGC CTCGAATTAG CCAATAAGAT GGGGGCGACA CGTGCAGTCA ATGTTGCTAA GGAAAGTCTC GAAGGGGTTA TGGAAGAACT TGGCATGACC GAAGGTTTCG ATGTGGGCCT CGAGATGTCG GGAGTACCGA GTGCATTCCA CTCCATGCTG GATACCATGA ACCACGGTGG CAAAATTGCC ATGCTGGGTA TTCCTGGTGG AGAGATGGCG ATCGACTGGA GTAAAGTTAT CTTTAAAGGA TTAATCCTGA AGGGTATCTA CGGTCGTGAG ATGTTTGAAA CTTGGTATAA GATGGCGAGC CTGATCCAAT CCGGATTAGA TATCTCTCCA ATTATCACTC ACCATTTCAA GATTGATGAC TTCCAGCAAG GCTTCGACGC TATGCGTTCG GGTCAATCAG GTAAGGTTAT TCTTAACTGG GATTAA
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Protein sequence | MKALSKLKPE EGIWMVDAPK PEMGHNDLLI KIRKTAICGT DIHIYNWDEW SQKTIPVPMV VGHEYVGEVI DMGIEVRGFD VGDRVSGEGH ITCGHCRNCR GGRTHLCRNT SGVGVNRDGA FAEYLVIPAF NAFKIPDDIS DDLASIFDPF GNAVHTALSF DLVGEDVLIT GAGPIGIMAA AVCRHVGARH VVITDVNEYR LELANKMGAT RAVNVAKESL EGVMEELGMT EGFDVGLEMS GVPSAFHSML DTMNHGGKIA MLGIPGGEMA IDWSKVIFKG LILKGIYGRE MFETWYKMAS LIQSGLDISP IITHHFKIDD FQQGFDAMRS GQSGKVILNW D
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