| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0098 |
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| Symbol | |
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| ID | 5612911 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 110846 |
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| End bp | 111682 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640930924 |
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| Product | rhomboid family protein |
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| Protein accession | YP_001471839 |
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| Protein GI | 157373239 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.351068 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00489186 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATAGAGA TAGGCAGATT ACCCAATGAG CGCGCAGCTC AGGCACTCGT CGATTACCTT
AAAGGTCAAA ATATCGATTG CAAAGTGATC GCTGCAGAAC AAGGTGTGAG CTTAATCGTT
ATTCATGATC AAGATAGCGT ACGGGCCGGA ATTGAGTTCC AGCGCTTTAT TCAAAACCCC
TACGATGAGA AGTACCTTCA GGCTTCCTGG GATAACGGTG ATACCAACGC AAAATTTGAC
TATGGCGCCC CGACACTTCA GTTGCTGACC CAGTTTATTA CAGGAGCCGG GCCGCTGACA
CTATCGATTT TTGGCGTCTG TATTTTGATT TTTGCCGGAT TCAACCTCGG CTTTGCCAAC
CCGATTTATG AATACCTCTC CTTCTTTAAT GCCGTACCCG GCACCGAACT CACCGACTTT
TGGAGAGTAT TCACCCCATC GCTGTTACAC TTTTCTGCCC TGCACATCAT TTTCAATCTG
CTCTGGTGGT GGTATTTAGG TGGGAAAATT GAGAATAAAA TCGGTATATC CCCTCTGCTT
ACTCTGCTTT TAGTAGCGGG AACCCTACCC AATATTCTGC AATATTTTAT TGGCGGGCCA
CATTTCGGTG GCCTCTCCGG CGTTGTCTAT GGGGTCGTGG GTTACACCTG GATCATGGGA
GTGAAGAGGC CAGAGAAAGG AATTGGACTC CCACCGGCAT TAATGGGGTT TTTAATGCTA
TGGTTAGTCT TCGGATTCAC CGACCTATTC GGGCTCTCCA TCGCCAATGG CGCACATACC
GGTGGTCTTG TGGTAGGTCT GTTACAGGGA TTGATTGATA GCAAAAGAAG AACCTAG
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| Protein sequence | MIEIGRLPNE RAAQALVDYL KGQNIDCKVI AAEQGVSLIV IHDQDSVRAG IEFQRFIQNP
YDEKYLQASW DNGDTNAKFD YGAPTLQLLT QFITGAGPLT LSIFGVCILI FAGFNLGFAN
PIYEYLSFFN AVPGTELTDF WRVFTPSLLH FSALHIIFNL LWWWYLGGKI ENKIGISPLL
TLLLVAGTLP NILQYFIGGP HFGGLSGVVY GVVGYTWIMG VKRPEKGIGL PPALMGFLML
WLVFGFTDLF GLSIANGAHT GGLVVGLLQG LIDSKRRT
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