| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0096 |
|---|
| Symbol | |
|---|
| ID | 5613080 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 106612 |
|---|
| End bp | 109413 |
|---|
| Gene Length | 2802 bp |
|---|
| Protein Length | 933 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640930922 |
|---|
| Product | DNA-directed DNA polymerase |
|---|
| Protein accession | YP_001471837 |
|---|
| Protein GI | 157373237 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
|---|
| TIGRFAM ID | [TIGR00593] DNA polymerase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00741762 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000000822051 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTAGCGG CATCATCGAA AATCAAAAAC CGAATACTCA TTATGCCAAA AATTGCTGAA
AACCCTTTAG TTCTTGTGGA TGGTTCCTCC TACCTATATC GAGCTTATTA TGCGCCACCA
CATCTAACAA ACTCTAAAGG TGAAGCAACC GGGGCTGTCT ATGGCGTAAT TAATATGCTT
CGTAGCCTGC TTAATCAATA TAAGCCCAGC CAGATGGCCG TTGTATTCGA TGCGAAAGGA
AAAACCTTTC GTAACGATAT GTATGAAGAG TACAAAGCGC ATAGACCAGC GATGCCGGAT
GATCTGCGTT CTCAAATAGA GCCACTGCAC AGAATAATAC GTGCTCTGGG CTTACCTCTG
GTTTGCATTC CCGGCGTCGA AGCCGATGAT GTTATCGGTA CCATCTCTAC TCAAGCCAGT
AAGGAAGGTC GAGCCGTCCT TATTAGTACG GGTGATAAAG ACATGGCTCA GCTGGTCGAT
GAGAATGTCA CGCTTATCAA TACTATGACT AACACCATAA TGGGACCCTC TGAGGTTACC
GAGAAATTTG GCGTCGGTCC TGAATTAATC ATCGATCTGT TAGCACTTCA GGGGGACAAG
GCTGACAACA TTCCCGGCCT GCCTGGTGTC GGAGAAAAAA CGGCCCTTGC CATGTTAACC
GGCGCAGGAA GCATAGATAA AATTCTTGCT GCACCAGAAA AAATGCCTGA GCTCGGTTTC
AGAGGCTCTA AGACCATGCC CGCTAAATTA GCCGAGCATG GTGATATGTT GAAGCTATCC
TACGAGCTCG CAACCATTAA ACTCGATGTC GAACTTGAGC AGGACTGGAA AGATCTCACC
ATAGCTCCGG CTGACAAAGA TGAATTGATA AAATGCTATG GCGAGATGGA GTTCAAGCGT
TGGTTGGCAG AAGTGCTTGA TAACAGGAGC GGCTCAAGTG CATCGACTCA AACGTCAACG
GAAGAAGATG AACTTCCTAA ACAAGATATC AAAACTGAAT ACTCGACGAT TCTTACCCAT
GACGAGCTTG ATGAGTGGAT CGATAAGCTG TCAAAAGCCG AGCTTTTTGC GGTCGACACC
GAAACTACCA GCCTCAACTA TATGGAGGCG AAACTTGTCG GTCTCTCTTT TGCTGTAGAA
GCGGGTAAAG CAGCCTATCT GCCCTTAGCC CATGACTATC TTGACGCGCC ACAGCAACTT
AACCAAGCCG AAGCATTGGC CAAGTTGAAA CCATTGCTGG AAAATCCAGA GATTAAAAAA
GTGGGCCAGA ATTTAAAATA TGACATGAGT ATTCTGGCTA ATGTCGGCAT AAAGCTGCAG
GGTATCGCCT TCGATACTAT GCTCGAATCA TATGTATTCA ACTCGGTCGC ATCCAAACAC
AACATGGATG ACTTGGCACT GAAATACCTG GGCCATAAAA ATATCAGTTT TGAAGAGATC
GCGGGGAAAG GGGCAAAACA GCTTACCTTC AATCAGATTT CATTAGAGGT CGCCGCACCT
TATGCGGCCG AAGATGCTGA CATCACCCTA AGGTTGCACC AACACCTCTG GCCAAGATTA
CAAAAAGAGC CGGAATTAGC CTCAATATTT ACCGAAATAG AGCTGCCTCT GGTTCAAGTG
CTTTCCGATA TGGAGCGCCA AGGGGTGCTT ATCGACAGCA TGCTATTGGG TCAACAGAGC
GAAGAGCTGG CCAGAACCAT CGATGAGCTT GAGCAGAAGG CTTATGAAAT CGCCGGTGAA
TCCTTTAACT TAAGCTCACC AAAACAGCTG CAAGTGCTCT TCTTTGAAAA ACTGGGCTAC
CCGATCATCA AGAAGACGCC TAAAGGTGCG CCATCGACCG CAGAAGAGGT GTTAGTTGAG
CTAGCCTTAG ATTACCCATT ACCTAAGATT ATTCTGCAGC ACAGAAGCTT AGCAAAACTA
AAGAGTACCT ATACCGATAA ACTACCGCTG ATGGTCAATG CGCAGACCGG CCGTGTTCAT
ACCAGTTACC ACCAGGCTAA TGCCGCCACC GGACGCCTGT CTTCCAGTGA GCCAAACCTG
CAAAACATCC CCATTCGAAC CGAAGAGGGA CGACGGATCC GTCATGCATT TATTGCTCGG
GAAGGCAGGA AGGTACTTGC TGCCGATTAC TCTCAAATTG AGCTACGCAT CATGGCACAC
CTTTCTCAGG ACAAAGGTTT ACTGACCGCA TTTGCAGAAG GTAAAGATAT TCATAAGGCG
ACTGCAGCAG AGGTCTTCGA TGTTGACTTC ACAGAGGTCA CAACCGAGCA GAGACGCCGC
GCCAAGGCGG TTAACTTTGG TTTGATCTAT GGCATGTCCG CATTTGGACT CGCTCGCCAG
CTTGATATCC CACGTGGTGA AGCCCAAAAA TACATAGATA CCTACTTTAA GCGTTATCCG
GGCGTACTTA ACTATATGGA AGAGACACGG GCAATCGCAG CCGATCTGGG TTACGTCTCT
ACACTCTATG GACGACGTTT ATATCTACCG GCAATTAAAG ATAGAAATGC CATGCGACGT
CAAGCTGCCG AGCGAGCCGC GATTAACGCT CCGATGCAAG GCACCGCAGC CGATATCATC
AAGAAAGCCA TGATTAATGT TGCAGACTGG ATTGCTAATG AAACTGATGG TGAGATCACC
CTTATCATGC AGGTGCACGA TGAATTAGTA TTTGAGGTCG ACAGTGATAA AGCCGAAGCA
CTTCAGGAAA AGGTATGTCA GTTGATGGCG GAAGCTGCCG ATCTTGATGT GGAACTGTTA
GCCGAAGCTG GGCTCGGTGA CAACTGGGAG CAGGCTCACT AG
|
|---|
| Protein sequence | MLAASSKIKN RILIMPKIAE NPLVLVDGSS YLYRAYYAPP HLTNSKGEAT GAVYGVINML
RSLLNQYKPS QMAVVFDAKG KTFRNDMYEE YKAHRPAMPD DLRSQIEPLH RIIRALGLPL
VCIPGVEADD VIGTISTQAS KEGRAVLIST GDKDMAQLVD ENVTLINTMT NTIMGPSEVT
EKFGVGPELI IDLLALQGDK ADNIPGLPGV GEKTALAMLT GAGSIDKILA APEKMPELGF
RGSKTMPAKL AEHGDMLKLS YELATIKLDV ELEQDWKDLT IAPADKDELI KCYGEMEFKR
WLAEVLDNRS GSSASTQTST EEDELPKQDI KTEYSTILTH DELDEWIDKL SKAELFAVDT
ETTSLNYMEA KLVGLSFAVE AGKAAYLPLA HDYLDAPQQL NQAEALAKLK PLLENPEIKK
VGQNLKYDMS ILANVGIKLQ GIAFDTMLES YVFNSVASKH NMDDLALKYL GHKNISFEEI
AGKGAKQLTF NQISLEVAAP YAAEDADITL RLHQHLWPRL QKEPELASIF TEIELPLVQV
LSDMERQGVL IDSMLLGQQS EELARTIDEL EQKAYEIAGE SFNLSSPKQL QVLFFEKLGY
PIIKKTPKGA PSTAEEVLVE LALDYPLPKI ILQHRSLAKL KSTYTDKLPL MVNAQTGRVH
TSYHQANAAT GRLSSSEPNL QNIPIRTEEG RRIRHAFIAR EGRKVLAADY SQIELRIMAH
LSQDKGLLTA FAEGKDIHKA TAAEVFDVDF TEVTTEQRRR AKAVNFGLIY GMSAFGLARQ
LDIPRGEAQK YIDTYFKRYP GVLNYMEETR AIAADLGYVS TLYGRRLYLP AIKDRNAMRR
QAAERAAINA PMQGTAADII KKAMINVADW IANETDGEIT LIMQVHDELV FEVDSDKAEA
LQEKVCQLMA EAADLDVELL AEAGLGDNWE QAH
|
|---|
| |