| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0095 |
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| Symbol | engB |
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| ID | 5613079 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 105192 |
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| End bp | 105854 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640930921 |
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| Product | ribosome biogenesis GTP-binding protein YsxC |
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| Protein accession | YP_001471836 |
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| Protein GI | 157373236 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0218] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR03598] ribosome biogenesis GTP-binding protein YsxC/EngB |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.043614 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000787502 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | GTGTCTGAAT CTTGTATTGA TTTTCGTAAA GCAAAGTTTT TAATCAGTGC TCCTGATATT
GCTCATCTGA ATGAGCACTT ACCTGGGGAT GCTGGAGTGG AAATCGCCTT CGCTGGCCGC
TCTAATGCTG GTAAGTCAAG TGCATTGAAC TTACTGACTG ACCAGAAGAG TCTGGCCAGA
ACCAGTAGAA CGCCGGGAAG AACCCAGCTA ATTAACATTT TTGAATTAGA TGAGAATCGT
CGCTTGGTGG ATCTTCCCGG GTATGGATTT GCTCAAGTTC CTCTTGCCTT GAAGAAAAAG
TGGCAGGAAT CTCTGGGAGA ATACCTGCAG GAACGCCAAT GTTTGGGGGG AATGGTGGTG
CTGATGGACA TCAGGCATCC GCTGAAAGAT CTGGATATGC AGATGATTGC CTGGGCGCTA
GAGAGTGAAA TACCGGTGCT TGCCTTGTTG ACTAAGGCTG ACAAGTTAAA GCAGAGCGAG
CGGATGAAGA TGGTGAACGA GGTGAGAAAG CACTTAGGTG ATTTTGATGA CCGGGTTAAG
GTCGAGCCTT TCTCATCTTT GAAAGGAATA GGTAAGGCTA AGGTATTGGG TATCTTGAAC
GAATGGTGCC ATCCGCAATG GCTGACAGAT GCTATTGCCG ATGCAGAAAC TGAAGAAGAG
TAA
|
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| Protein sequence | MSESCIDFRK AKFLISAPDI AHLNEHLPGD AGVEIAFAGR SNAGKSSALN LLTDQKSLAR
TSRTPGRTQL INIFELDENR RLVDLPGYGF AQVPLALKKK WQESLGEYLQ ERQCLGGMVV
LMDIRHPLKD LDMQMIAWAL ESEIPVLALL TKADKLKQSE RMKMVNEVRK HLGDFDDRVK
VEPFSSLKGI GKAKVLGILN EWCHPQWLTD AIADAETEEE
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