| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0087 |
|---|
| Symbol | |
|---|
| ID | 5613404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 94830 |
|---|
| End bp | 96911 |
|---|
| Gene Length | 2082 bp |
|---|
| Protein Length | 693 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640930913 |
|---|
| Product | flagellar biosynthesis protein FlhA |
|---|
| Protein accession | YP_001471828 |
|---|
| Protein GI | 157373228 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1298] Flagellar biosynthesis pathway, component FlhA |
|---|
| TIGRFAM ID | [TIGR01398] flagellar biosynthesis protein FlhA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0364653 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTGGT TATCGCGCAC TTTTGCAGGC AATCGCAGTT ATATAGGGAT CCCTATCATG
CTGCTAGCCA TTCTTGCCAT GGTTATTCTT CCACTGCCTC CTTGGTTGCT GGATATCCTG
TTTACCTTCA ACATTGTGCT GGCGGTGATG GTGTTGCTTG TCAGTGTTTC CATCAGGCGT
CCCATCGACT TTTCGGTCTT TCCGACAGTG CTCTTGTTAG CCACCTTGAT GCGGTTAACC
TTGAATGTGG CTTCGACGCG TGTGGTTCTC ATCGAAGGAC ATCAGGGGGG AGACGCCGCA
GGACGTGTGA TCCAGGCGTT TGGTGAGGTA GTTATCAATG GTAACTATGT CGTCGGTGGG
GTGATCTTCT TAATCTTGAT GATTATTAAC TTTGTGGTGA TCACTAAAGG TGGAGAGCGG
ATCTCTGAGG TATCGGCTCG CTTTACTCTC GATGCGCTTC CTGGCAAGCA GATGGCTATC
GATGCGGATC TCAATGCGGG GGTCTTGAGC CAGGAACAAG CGAGAGTACG TCGTCAGGAT
GTCGCCCGTG AAGCCGATTT CTATGGTTCT ATGGATGGTG CATCTAAATT TGTTCGTGGT
GATGCCATTG CAGGTTTAAT GATCTTGGCC ATCAATATTC TTGGCGGTAT CGCTATTGGT
GTCTTCATGC ATGGTCTGAG TGCAGGAGAG GCATTCAGGA CTTACGCCCT GCTGACCATT
GGTGATGGAC TCGTTGCCCA AATTCCTTCT CTGTTGTTGG CTACTGCGGC GGCGATTATC
GTGACGCGAG TCTCCGATGC CGAGGAGATG CCGACTCAAC TGAGTAAGCA GTTGTTGGCT
AACCCTAAGA CGTTGGCTAC CGCTGCGGCG GTGATGACTA TCTTGGGTTT AGTACCGGGC
ATGCCTGCTT TTGTCTTCCT CTCATTTGCC GCCTTGTTAG GTTTTGCAGC CTGGAAGCAG
AGCCAGGGAA GGTCGGTCCA GCCAGAAACT GAAGTTGAAG AGCAGTTGGA GAAGAGTCTG
TCAGAGCCTT CGGCCCCAAG CTGGGATGCA TTGCCGTTCA CCGATCTTAT CGAGGTGCGC
TTGGGTTACC GCTTAGTACA CCTGGTTGAG CGCAGCAAGG GCGCCGAGTT GCAAAAACGA
CTGACGGGAA TCAGGCGAAC CTTGTCTGAG CAAGCGGGAT TTTTACTCGC AGAAGTCAGG
GTCAGGGATA ATTTAGCCTT AGCGCCCAAT GCTTATCAAA TTAACCTGAT GGGCAACCCA
GTGGTGACCG CGGAGCTGGA ACCGGAGCGA ATGATGGCCA TTAAGAGTGG TCCGGTTTTC
GGTGATATAG ATGGTGTAAT AACCAAGGAA CCTGCCTACA ACATGGATGC GACCTGGATT
GAGCCAGAGC TAAAGGCTAA GGCTTTAAAT CTGGGGTATT CGGTTGTCGA TAATGCCACC
GTTATCGCGA CGCATGTGAG TAAGCTTATA CGTGAATCTT TACCGGATAT GCTGCAACAT
GATGATGTTA TCGCCTTGAG CGATCGCCTC GCGAAACAGT CACCTAAATT GGCCGAATCT
TTAAGTACGG CATTGACCCC AATCCAGCAG CTTAAGGTGT ATCGTCTGTT GTTGAAAGAG
CAGGTGTCGC TGAAAGATAT TCGCACCATA GCGACGACCC TGCTCGATTG CAGTGAAAAC
AGTAAAGATC CTGTCCTGTT GGCCGCCGAT GTACGTTGTG CCCTCCGTAA TAGTATTCTT
CACTCTATCG CAGGCTCAGC TCCGCAGATC AATGTATTGA CCTTGGCACC GGAGCTGGAG
CAGACCTTGA TGACCGCGCT TAACCAGTCT CAGCAGCAGG GGAAGGTTGC ACTGGACAGT
TTTCCGGTAG AGCCGCAGCT GCTCGCACAG TTGCAGCAGA AGATGCCGCA AATATTAGCG
GATGCCAAGG AGCAGGGTCA TAGCCCTATG TTGCTGGTAT CGCCACAACT CAGGCCTATC
CTTGCCCGAT ACGCATTGGC TTTTGCCAGA GGGTTACATG TGCTCTCATA CAATGAGATC
CCAGAGACTC GGGAGTTGAT GGTCGCGGGG CAACTTGGCT AG
|
|---|
| Protein sequence | MNWLSRTFAG NRSYIGIPIM LLAILAMVIL PLPPWLLDIL FTFNIVLAVM VLLVSVSIRR
PIDFSVFPTV LLLATLMRLT LNVASTRVVL IEGHQGGDAA GRVIQAFGEV VINGNYVVGG
VIFLILMIIN FVVITKGGER ISEVSARFTL DALPGKQMAI DADLNAGVLS QEQARVRRQD
VAREADFYGS MDGASKFVRG DAIAGLMILA INILGGIAIG VFMHGLSAGE AFRTYALLTI
GDGLVAQIPS LLLATAAAII VTRVSDAEEM PTQLSKQLLA NPKTLATAAA VMTILGLVPG
MPAFVFLSFA ALLGFAAWKQ SQGRSVQPET EVEEQLEKSL SEPSAPSWDA LPFTDLIEVR
LGYRLVHLVE RSKGAELQKR LTGIRRTLSE QAGFLLAEVR VRDNLALAPN AYQINLMGNP
VVTAELEPER MMAIKSGPVF GDIDGVITKE PAYNMDATWI EPELKAKALN LGYSVVDNAT
VIATHVSKLI RESLPDMLQH DDVIALSDRL AKQSPKLAES LSTALTPIQQ LKVYRLLLKE
QVSLKDIRTI ATTLLDCSEN SKDPVLLAAD VRCALRNSIL HSIAGSAPQI NVLTLAPELE
QTLMTALNQS QQQGKVALDS FPVEPQLLAQ LQQKMPQILA DAKEQGHSPM LLVSPQLRPI
LARYALAFAR GLHVLSYNEI PETRELMVAG QLG
|
|---|
| |