| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0086 |
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| Symbol | |
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| ID | 5613253 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 93496 |
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| End bp | 94626 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640930912 |
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| Product | flagellar biosynthetic protein FlhB |
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| Protein accession | YP_001471827 |
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| Protein GI | 157373227 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1377] Flagellar biosynthesis pathway, component FlhB |
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| TIGRFAM ID | [TIGR00328] flagellar biosynthetic protein FlhB |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.293777 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTAAAG ATACCGGTCA GAGTAAAACG GAAAAGGCGA CCCCGCAGAA ACTCAAGAAG
GCACAGGATC AGGGGCAGGT TCCCAGATCC AAAGATCTCG CGGCTACAGC CTTAATCATA
GGTTGCTCCC TGATGCTGAC GGCGAGTGCA GACTGGTTTG CCACACGGGT TGCACGGGTG
GCTCAGTACA ATATGTCACT CACCAAGGCT GAATTGGATG AGCCTGGGAT GATGATGAGC
CACTTAGGCA CCTCCTTGGT GGAGATCCTC AACATTTTGG GCCCCATTAT TGTTTTGATC
GCAGTACTGG CCATGGTGGC GGGATCTATG CCTGGTGGAC CGGTTTTTAA TTTTAAAAAT
GCCGCATTCA AATACAGTCG CATCGACCCC ATAGCTGGCA TAGGGCGGAT GTTCTCGATG
AAGTCTCTGG TTGAGCTGGT GAAGTCGATA CTTAAAATTG TCTTGCTGAT CGGCATCATG
TTTACCTTCC TCGAACATAA CCTGCAAAGC CTGTTGGGCT ATAGCCAACT TCCAATCGAT
GAAGCCGTAC GTAAGGGGAT CGACATCTTG TCTTTGGGAA TGCTCTATTT GGGGATAGGC
ATGCTGGTGA TCACCTTTAT CGACGTTCCA TATCAGTATT GGCACCACCA TAACGAGTTG
AAGATGTCCC GCCAGGATGT GAAAGATGAG CACAAGCAGC AGGAAGGAAA GCCAGAGATT
AAGGCGAAAA TTCGTCAGTT ACAACAGCGC ATCGGCCGTT CCAGGGCCGA TGTTGCGATC
CCACAAGCCG ATGTCTTGCT GGTTAACCCC AACCATTATG CTGTCGCGCT TAAATATGAT
GTCGAAAAAG CCGATGCACC TTACGTGCTC ACTAAGGGAA CAGATGAACT GGCGTTATAT
ATGCGCCAGA TTGCCAAACA TCATGATGTT GAAGTGATCG AACTGCCGCC ATTGGCGCGT
GCTATCTACT ACTCGACCCA AGTCGAGCAG CAGATCCCGG CCGCCCTGTT TATTGCCATC
GCTCATGTGC TCAGCTATGT GTTGCAGATT AAGGCTGCGC GGCAGGGTAA GCAGCAAAGA
CCAGACCCGC TACCTAATTT CTTTATTCCG CCCCATCTAC GTCGTGACTA A
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| Protein sequence | MSKDTGQSKT EKATPQKLKK AQDQGQVPRS KDLAATALII GCSLMLTASA DWFATRVARV
AQYNMSLTKA ELDEPGMMMS HLGTSLVEIL NILGPIIVLI AVLAMVAGSM PGGPVFNFKN
AAFKYSRIDP IAGIGRMFSM KSLVELVKSI LKIVLLIGIM FTFLEHNLQS LLGYSQLPID
EAVRKGIDIL SLGMLYLGIG MLVITFIDVP YQYWHHHNEL KMSRQDVKDE HKQQEGKPEI
KAKIRQLQQR IGRSRADVAI PQADVLLVNP NHYAVALKYD VEKADAPYVL TKGTDELALY
MRQIAKHHDV EVIELPPLAR AIYYSTQVEQ QIPAALFIAI AHVLSYVLQI KAARQGKQQR
PDPLPNFFIP PHLRRD
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