| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0077 |
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| Symbol | fliF |
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| ID | 5613482 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 85129 |
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| End bp | 86841 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640930903 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_001471818 |
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| Protein GI | 157373218 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTACAA CACTCGCTCA ACCTAGCCCA AATATGACCG ATGTCAGAGA TAAGAGTGAA
ATAGTCAGCT CTTTGAAGAC GAAATGGCAA CAATTTAACC GTGGTGATCG TCAGGTATTA
GTGCTGGCAA TTCTGGCGAG TGTCGTTGCT TGTGTTATCG TGCTTTTACT CTGGACGGCA
AGCCAGGGCT ATCGTCCCCT CTATGGTCAA CAAGAGAAAG TTGAAACCTC ACAGATAATC
GAAGTCCTCG AAGCCGAAGG CATTAATTAC CGACTGGAGG CCAATTCAGG CTTGGTGCTG
GTCCAGGAGG ATAAGCTAGG TAAAGCGAGA ATGTTACTCG CTGCTCGTGG CGTAAAAGCT
AAAGTCCCTT CAGGTATGGA ATCGCTGGAT AACTCAGGCA TTGGTACCAG CCAGTTTATG
GAACAGGCAA AATATCGCCA TAGCCTGGAA GGCGAGCTGT CTCGCACTAT CATGGCATTA
AAAGCCGTTC GCACCGCCAG AGTTCACCTT GCCATTCCTA AACGAACCTT GTTTATTCGT
CAGCAACCTG AACTTCCATC GGCCTCTGTG ATGCTGGACC TTTACGCAGG CTCAAAAATT
CAACCGGGTC AAATCGAAGC CATTGCAAAC TTAGTTGCCG GAAGCGTCAC CGGCATGACC
CCGGAGCGGG TGCAGATTGT CGATCAGGAG GGGAATCACC TTAGCTCGGG GATAGCGATC
AACCAAGATA TTACTCAGGC CAGAGATCGC CAGCTCAAGT ACACCCAGGA GTTAGAGCAG
AGCCTGATCA ACCGAGCATC AAGTATGCTG GCTCCAGTGC TGGGTAAGGA AAACTTTCAG
GTTCAAATTG CCGCTCAAGT TAACTTTAAC CAGGTCGAAG AGACCCGTGA ATCACTGGAT
CCTCAATCAG TGGTAACCCA GGAAAAGCAA AGCATCAACG ATACTAACAG TGATATCGCC
ATGGGTATTC CTGGCGCACT CACAAATCAG GCTCCGAAAG CGCAGGCAAA TAAAACTGAA
GAAAACACCC GCCGTAACCT GAACCAACAG GAGAGCCGTC AGTATGAGGT TGGGCGTTCC
GTCAGGCATA CCCGCTTTCA GCAGATGCAA CTGGAAAACC TATCCGTTTC GGTACTCCTC
AATAACCAAG CCGCCGGTGA AAATGGATGG AACGAAGCTC AGGTATCCCA GCTGGGCACT
ATGGTAAAAG ATTCGATTGG CTACTCAATG CAGCGTGGCG ATCAATTCAG CATAAACAGC
TTCGATTTTG CCCCGGTACA GATAGCCCAG TTTGAACCTA TGCCCTGGTG GCAAACAGAA
GGTTATCAAG CTTACCTCAG GTATTTCATT GGTGGAATTC TTGGTTTCGG GCTCATTTTC
TTTGTATTGC GGCCACTCGT GTCTCACTTG ACCCGCACGG CAGAGCATAG CCTCAAAGAG
GAGCTGCCTC AGGTAGAGCC GGCACTGGAG GCTCCAAGCT CAAGTAGTAT CAGCGGCGTT
CAATCCGGCG ATGGTCAGGC TCTGGCAGAT CAATTGATGG GGCTCGAACA GGATAAGTCT
GATACCGACT GGCTCAGTAA TCAGGGACTG CCGGCACCAG GATCACCACT CACGGTGAAG
ATGGAGCACC TGAGCCTACT CGCTAACCAA GAGCCCGCTC GTGTGGCTGA GGTTATCGCT
CACTGGATAG GCGATAACGA AAACGAGAGA TGA
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| Protein sequence | MSTTLAQPSP NMTDVRDKSE IVSSLKTKWQ QFNRGDRQVL VLAILASVVA CVIVLLLWTA
SQGYRPLYGQ QEKVETSQII EVLEAEGINY RLEANSGLVL VQEDKLGKAR MLLAARGVKA
KVPSGMESLD NSGIGTSQFM EQAKYRHSLE GELSRTIMAL KAVRTARVHL AIPKRTLFIR
QQPELPSASV MLDLYAGSKI QPGQIEAIAN LVAGSVTGMT PERVQIVDQE GNHLSSGIAI
NQDITQARDR QLKYTQELEQ SLINRASSML APVLGKENFQ VQIAAQVNFN QVEETRESLD
PQSVVTQEKQ SINDTNSDIA MGIPGALTNQ APKAQANKTE ENTRRNLNQQ ESRQYEVGRS
VRHTRFQQMQ LENLSVSVLL NNQAAGENGW NEAQVSQLGT MVKDSIGYSM QRGDQFSINS
FDFAPVQIAQ FEPMPWWQTE GYQAYLRYFI GGILGFGLIF FVLRPLVSHL TRTAEHSLKE
ELPQVEPALE APSSSSISGV QSGDGQALAD QLMGLEQDKS DTDWLSNQGL PAPGSPLTVK
MEHLSLLANQ EPARVAEVIA HWIGDNENER
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