Gene Ssed_0072 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0072 
Symbol 
ID5613954 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp81067 
End bp81504 
Gene Length438 bp 
Protein Length145 aa 
Translation table11 
GC content45% 
IMG OID640930898 
Producthypothetical protein 
Protein accessionYP_001471813 
Protein GI157373213 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGAATA AAAGAGAGAT TGTTCAATCG ATTATTCGTG GTATTCGTCA GGATATCGAA 
GGTTATAAGC AACTTAAAAG CATGTTGAAA CGTCAAAGAG ACTTGATGCA ACGACGCGAT
AATCACGGAC TTAAGTATCA CAATGGCCAC CAAACGACGC TGTGTGAACA TCTTCAGCAG
CGAGCTAAGC TTCGAAGTGA AGGGCTTATC AGCTTAGGGT TTGCGGGGGA TGCCAGTGGT
ATGGCACAAC TTATCGCCAA GCTACCGGCT CAAGCATCGA CTCAGATGAA GCTGTTATGG
GAAAACCTGT TGATCTTGGT CAAAGAGAGT CAGCGGGTGA ATGAAGCCAA TGGTAAGCTG
TTAGTCGGTC AACAAGAGGT GATAACTAAC TTATTGAATC GAGATGTTCC GCAAAATATA
GACTATGGTG CGCCGTAA
 
Protein sequence
MSNKREIVQS IIRGIRQDIE GYKQLKSMLK RQRDLMQRRD NHGLKYHNGH QTTLCEHLQQ 
RAKLRSEGLI SLGFAGDASG MAQLIAKLPA QASTQMKLLW ENLLILVKES QRVNEANGKL
LVGQQEVITN LLNRDVPQNI DYGAP