Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0056 |
Symbol | |
ID | 5610966 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 66518 |
End bp | 67894 |
Gene Length | 1377 bp |
Protein Length | 458 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640930882 |
Product | flagellar hook-associated 2 domain-containing protein |
Protein accession | YP_001471797 |
Protein GI | 157373197 |
COG category | [N] Cell motility |
COG ID | [COG1345] Flagellar capping protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTTCAG GTATGAGTGG ATCCCAGTTT GCAGAACAAC TCATCGGCGC TGAGCGAATG GGTAAAGATC AGCTGTATCA GAGCAATATG ACTAAGCATC AGACCCAGCT TGATGCCTAT GAAATACTCG AAAAAAGCCT GAATCAGATG ACCAAAAATC TGGAAAAACT AGATGGCGAT GCCTTCGACA GCAAGACCTC GACCGTAAGC GACGATAACG CATCGATCAC CGTCGAAAGT GGTGCCGCAA CGGGTAGCTA TGACCTCTAT GTCAAACAGC TGGCTCAGGC CCATCAGATA TCCAAGAGTT TCAGTGGTGA AGATGCTGCT CTCCCCACAA GTGGTGTGCT CACTATCCAG GTTGGGCCGG ATGTAGCAGA CACCTTAACC CTGGATATGG CGGTATATAA CCCAGGCGGT AACGCCACGG TCTCCGATCT CACCGGGATG ATCAACAGCC ACCCGGATAA TCCGGGAGTA CAAGCTTCAT TGGTGCGCAC CGGCGGTCAG GTTGAACTCA TGCTCTCCTC TACAGAAACC GGCGCCGACA GCACTATCGA CGTGAAGATG GATGGTGCTG ACTGGGGCAT GACCGAGCGC AGAGCGGCAC AGGACGCCGA GCTTACCCTC AACGGTATCG ATATAAAAAG CAGCAGTAAC TACCTGAATA ACGTCATCGA TGGAGTGTCT ATTGAGCTTA ATAAGGCCCA CGGCGTGGGC GAAAGCAGCA CCATAAAAAT AGAGTCAGAT ACCGATGCCA GTGAACAGGC GGTTAAAGAT TTTGTGGACA GTTTCAACGA GCTGATGGAT CAGATAAACC AACTGACACG TTCCATGGGA AGTTCGGTGC TGGATGACAT CAATGACGAC AATGATAAAG ACAAGGATGA AGACGATGAT GATGACGACG ATGACAGCCC CTCTTCGGTC ACAGAAGATC AGCTCGGCGC ATTAAAGGGC GATTCGAGTG TCCGCATGCT GCAAAACAGC ATGAGAAGCG CCATCTTCGA TCCAGCATCA AACGGGATGC GTCTATCGGA TATCGGCATT GAGATGACTC GAGAGGGTAA ATTAGAGATA GATGAAGACA AGCTAGCCAA GGCCCTGAAA GATGATCCCG GTGCGATAGA GGCCATGTTC ACCGGCAGCG ATAATTATGT CGACAGAATG GACGGCATCA TCGATCCCTT CACTAAATCC AACGGCTATT TAGATCTTAA ACAAGAGAAT CTGGATAAGC AGATCACCCG AGTCGAAGAC AACATGGCTC GCCACGATTA CCAGATGGAG CAGAGGTATC AAATCTACCT CGCCCAATTT ACAGCAATGG AGGCCACCAT CAACCAACTT AACTCGGCCA GCGCATTGTT TTACTAA
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Protein sequence | MISGMSGSQF AEQLIGAERM GKDQLYQSNM TKHQTQLDAY EILEKSLNQM TKNLEKLDGD AFDSKTSTVS DDNASITVES GAATGSYDLY VKQLAQAHQI SKSFSGEDAA LPTSGVLTIQ VGPDVADTLT LDMAVYNPGG NATVSDLTGM INSHPDNPGV QASLVRTGGQ VELMLSSTET GADSTIDVKM DGADWGMTER RAAQDAELTL NGIDIKSSSN YLNNVIDGVS IELNKAHGVG ESSTIKIESD TDASEQAVKD FVDSFNELMD QINQLTRSMG SSVLDDINDD NDKDKDEDDD DDDDDSPSSV TEDQLGALKG DSSVRMLQNS MRSAIFDPAS NGMRLSDIGI EMTREGKLEI DEDKLAKALK DDPGAIEAMF TGSDNYVDRM DGIIDPFTKS NGYLDLKQEN LDKQITRVED NMARHDYQME QRYQIYLAQF TAMEATINQL NSASALFY
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