Gene Ssed_0052 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0052 
Symbol 
ID5610311 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp64214 
End bp64672 
Gene Length459 bp 
Protein Length152 aa 
Translation table11 
GC content43% 
IMG OID640930878 
Productflagellar basal body-associated protein FliL 
Protein accessionYP_001471793 
Protein GI157373193 
COG category[N] Cell motility 
COG ID[COG1580] Flagellar basal body-associated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCATTTG GTAATAGTAG CGTTAGCAAA AAATTTTCAT TCACGTTTGT TATTCTTTTA 
TGGAGCGCTG GAATATTTTG GGTCGGATGG CAATCACCAA GCATTATTGG CGGCCCATTT
GTGACTCAGG AAAAAGAATC GAATACAGCA AAGTTTTATC CATTAGACCG ATTTGTAATC
TCCGTACCAG GAGACAAGTA CCCCCACTAT CTGCTGCTTG AGATGGCACT TAAAAGCAGC
TCACCAAATG TAAGTCGTAC TCTGAAGGAA GCCGATCCCC TCGTCAGAAA TTCACTAATG
AAGATGTTTT CCCGAAAACA TTTTAACCAG CTCAATGACT CTCATCAGCT CGAAGCGCTC
CAAAAAGAGG CGTTGGTCCT GCTTTCAGGG GTACTGTCCG ACAACCATTA CTCCATAGAA
CTCGAAGATG TGCTCTTCAC TCGTATGGTT ATTCAGTAA
 
Protein sequence
MAFGNSSVSK KFSFTFVILL WSAGIFWVGW QSPSIIGGPF VTQEKESNTA KFYPLDRFVI 
SVPGDKYPHY LLLEMALKSS SPNVSRTLKE ADPLVRNSLM KMFSRKHFNQ LNDSHQLEAL
QKEALVLLSG VLSDNHYSIE LEDVLFTRMV IQ