| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0043 |
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| Symbol | |
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| ID | 5612497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 49687 |
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| End bp | 50502 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640930866 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_001471784 |
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| Protein GI | 157373184 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00363655 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.913504 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGATA AATATGCCGT TTTTGGCAAC CCTATTGCCC ACAGTAAATC TCCGCTGATC
CATGGTCTAT TTGCGAAAGA AACGGCACAA GTTCTGGAGT ATGAAGCAAT ACTTGCCCCG
GTCGATGAGT TTGCTTCCTG CTTAGATGAG TTTTGGAAAG GAGAGGGGAA GGGGGCTAAC
GTCACGGTGC CTTTTAAAGA GCAGGCGTTT AACTTGTGTG ACGAGCTAAG TGAAGAGGCT
AAGTTAGCTG GTGCGGTGAA TACCTTAACT GTGCAAGCTA ACGGCGTGAT CCGGGGTGAT
AATACCGATG GTTTAGGGCT GGTTGCAGAT CTGAAAAGAC ACATGGGTGA GCTTAATGGT
TTGTCTGTTT TACTTGTGGG AGCTGGTGGC GCGGCCAGAG GAAGTATCTT ACCGTTACTA
CAATCGGGTA TCAGCAAGCT GACAATCGTT AACCGGACTC AAGGCAAAGC AGAGCGACTG
GTTGATATCT TTTCTGAATA TGGTGAGGTC TGTGCTTTAC CTATGGAACA TGAAGATAAA
AGTTATGACA TCATTATTAA CTCAACTTCT TCCAGTTTGA CTGGAGAGGT TCCTAACTTG
TCGACTCAAG TTATAGATAC GAGTACGGTT TGCTACGATA TGATGTATGG AAAAGAGCCT
ACATCTTTTA ATGTATGGGC AAAAGAGCAA GGCGCAAAAC TGACTTTAGA TGGTTTAGGT
ATGTTAGTTG GTCAAGCTGC CCAAAGTTTT GCTATTTGGC GCAAGGTTAA ACCGAGTGTA
GAACCTGTAT TAGCAGAACT TAGAACACTG CTTTAA
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| Protein sequence | MTDKYAVFGN PIAHSKSPLI HGLFAKETAQ VLEYEAILAP VDEFASCLDE FWKGEGKGAN
VTVPFKEQAF NLCDELSEEA KLAGAVNTLT VQANGVIRGD NTDGLGLVAD LKRHMGELNG
LSVLLVGAGG AARGSILPLL QSGISKLTIV NRTQGKAERL VDIFSEYGEV CALPMEHEDK
SYDIIINSTS SSLTGEVPNL STQVIDTSTV CYDMMYGKEP TSFNVWAKEQ GAKLTLDGLG
MLVGQAAQSF AIWRKVKPSV EPVLAELRTL L
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