| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0042 |
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| Symbol | |
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| ID | 5612496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 48531 |
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| End bp | 49451 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640930865 |
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| Product | coproporphyrinogen III oxidase |
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| Protein accession | YP_001471783 |
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| Protein GI | 157373183 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0408] Coproporphyrinogen III oxidase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0059194 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.559288 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTGTGC CAGACACCAG TGCAGTAAAG GCGTTTTTAC TCGATCTTCA ACAGCGAATT
TGTGAAGGTT TGGAGCAGTT AGATGGAAAA GGGACGTTTG AAGCTGATTC CTGGAAGCGT
GAAGAGGGAG GTGGCGGTAC GAGCCGTGTA TTAACTAATG GCAAAGTATT CGAGCAGGCA
GGTGTAAACT TTTCTCATGT TACCGGTGCT GCAATGCCGG CATCGGCAAC GGCTAACAGG
TCCGAACTTG AAGGCCGTAG TTTTGAGGCT ATGGGGGTTT CTTTAGTTAT TCACCCAAAA
AATCCATTTC TTCCTACCAC TCATGCCAAT GTTCGTTTCT TTATCGCTAA AAAAGAGGGA
GCAGATCCTG TTTGGTGGTT TGGCGGTGGT TTCGACCTTA CTCCCTATTA CCCGTTTGAA
GAGGATGTAA TCGAATGGCA CCAGAATGCC CATGATTTAT GTCAGCCATT TGGAGAATCT
GTTTATCCTA AATATAAGAA GTGGTGTGAT GAATACTTCT TCTTACCCCA TCGTAATGAA
ACTCGTGGTG TTGGCGGCTT ATTCTTTGAC GATCTCAATC AAGACGGGTT TGAAAAAAGC
TTCGAGTTTA TGCAGGCTGT CGGTAATGGT TTCTTGACTT CATACGCTCC AATTGTTGAG
CGCCGTAAAG ATACAGAATA TGGCGAAAAA GAGCGAGAGT TCCAGCTATA TCGTCGTGGA
CGTTATGTTG AGTTTAATCT GGTCTACGAC AGAGGAACCT TGTTTGGATT GCAAACTGGT
GGCCGAACCG AGTCGATATT GATGTCTATG CCGCCGCTGG TTCGTTGGCA GTACGCCTAT
ACACCGGAAG AAAATTCGGC TGAAGCACTT CTTTATACCG ACTTCTTAAA ACCGAAGGAC
TGGTTAAACT TAGATGAATA A
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| Protein sequence | MSVPDTSAVK AFLLDLQQRI CEGLEQLDGK GTFEADSWKR EEGGGGTSRV LTNGKVFEQA
GVNFSHVTGA AMPASATANR SELEGRSFEA MGVSLVIHPK NPFLPTTHAN VRFFIAKKEG
ADPVWWFGGG FDLTPYYPFE EDVIEWHQNA HDLCQPFGES VYPKYKKWCD EYFFLPHRNE
TRGVGGLFFD DLNQDGFEKS FEFMQAVGNG FLTSYAPIVE RRKDTEYGEK EREFQLYRRG
RYVEFNLVYD RGTLFGLQTG GRTESILMSM PPLVRWQYAY TPEENSAEAL LYTDFLKPKD
WLNLDE
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