| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0036 |
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| Symbol | |
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| ID | 5613594 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 42423 |
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| End bp | 43526 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640930859 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_001471777 |
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| Protein GI | 157373177 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.971795 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.107314 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAAAACC CCATGAAACG ACTAATTTTA CTCGCTTTAA TGATAATAAG TTGCTCGTTC
GTGTTCGCGG ATACTTTGAC ATTAAAGTCC GGGCACCCAG ATTCTTATGT TGTAAAGAAG
GGAGACACCC TCTGGGATAT CTCCGAACAC TTTTTAAATG ATCCCTGGCG TTGGCCTAAA
CTCTGGGGCG CAAACCCTCA AATAGCCAAC CCACACCTTA TCTATCCGGG GGATCGACTC
ACCTTAGTAT TTATCGATGG TGAACCAAGA TTAGTGGTTA AGCCGCATAT TCGCAAAAGC
CCCGAAGGTC GAATAATGCC AAAAGGTGGG GCTATACCTG CGGTTGACTT GTCCCTTATC
CGTCCATTTT TGGTGCAAAA CAGAGTTGTA GACGGTGATT GGTTTGATGA GCAGCCTCTG
GTTATGGGCG GCGAAAGTGA GTCCAAATAT CATATCGCTA ACGATATCAT CTATGTTCAA
GCTGAGCTCA CCTTAGGTGA TAAATTTGGC GTGTATGCTC AAGGCCGTGA GTTTGTCAGC
AAGGAAGAGG GCGAGCTACT GGGTCAAGAA GTGATGTTGA CTGCAAGTGG TCGTGTCATC
GAATCCGGAC CTATTTCTAA AGTCAGGTTG CTGAGTAATT TTCGTGAAAC GAAAGCCGGA
TACCGAGTCT TACCGATTGA AGAAGATTCC CTGCTCTCCG CTTATTTCAT GCCCAGAGCC
GCCAACCTGG AAACTCCTGC ATCGGTAATC GCTTCTGATA AGAAGAACAG AGAGATGGGT
AAGCTGGATG TTGTCTACAT AGATAAAGGA AATGAGGATG GTGTGGAAGC CGGACACGTG
TTCTCTATCT TCAGAGAGGG TGTCGATATC GTTATCAACG GCGATGGCCA GCCGGTGCTG
CCTCAGGATC GTAGCACCTA TGAAAGCTTA TTAACCGGGA TATCCTCCGA TAACGCTGTA
AAAATGCCGG ATATCTATCG TGGAAAGCTT ATGGTGTTCA AGGTATTCGA TAAAACCAGC
TTGGCTTTGA TCATGGTAAA TGAAAGGCCT GTGCGGGTTG ACGACAAGCT TATTCAGCCA
AGCTCTCTAT TGGCGAGTGA ATAG
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| Protein sequence | MENPMKRLIL LALMIISCSF VFADTLTLKS GHPDSYVVKK GDTLWDISEH FLNDPWRWPK
LWGANPQIAN PHLIYPGDRL TLVFIDGEPR LVVKPHIRKS PEGRIMPKGG AIPAVDLSLI
RPFLVQNRVV DGDWFDEQPL VMGGESESKY HIANDIIYVQ AELTLGDKFG VYAQGREFVS
KEEGELLGQE VMLTASGRVI ESGPISKVRL LSNFRETKAG YRVLPIEEDS LLSAYFMPRA
ANLETPASVI ASDKKNREMG KLDVVYIDKG NEDGVEAGHV FSIFREGVDI VINGDGQPVL
PQDRSTYESL LTGISSDNAV KMPDIYRGKL MVFKVFDKTS LALIMVNERP VRVDDKLIQP
SSLLASE
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