| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0035 |
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| Symbol | def |
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| ID | 5613593 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 41785 |
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| End bp | 42297 |
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| Gene Length | 513 bp |
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| Protein Length | 170 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640930858 |
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| Product | peptide deformylase |
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| Protein accession | YP_001471776 |
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| Protein GI | 157373176 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0880297 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTTTAT TAAAAGTTTT ACGTTTTCCC GATGAGAGAT TACGCACGAT TGCGAAGCCT
GTAGCAGAGT TTAACGCTGA CCTGCAGGCT CAAATCGATA ATATGTTCGA CACCATGTAT
GAAGAGAAGG GGATCGGACT GGCCGCAACG CAAGTCGATT TTCATCAACA CTTGATAATC
ATGGACCTAC AAGATGATGT AGAGAGACCC ACAGTGTTCA TCAATATGGA GATAACTGCC
CGTGATGGCA GTTGTACCAA TGAAGAGGGC TGTCTTTCTG TACCTGGTAT CTATGCCAAC
GTAGATCGCG CCGAGTCGGT AACGATTAAG GCTTTCGACC GTGAAGGTGT TGAATTCACC
TTAGATGCAG ATGGGCTGTT TGCGATATGC CTGCAACACG AATTAGACCA CCTTAACGGT
AAGTTATTTG TGGATTACCT GTCGCCATTA AAGCGCCAAA GAATCAAACA GAAACTCGAA
AAAGCAGCCA GACTCGAAGC CAAACAAGGA TAA
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| Protein sequence | MSLLKVLRFP DERLRTIAKP VAEFNADLQA QIDNMFDTMY EEKGIGLAAT QVDFHQHLII
MDLQDDVERP TVFINMEITA RDGSCTNEEG CLSVPGIYAN VDRAESVTIK AFDREGVEFT
LDADGLFAIC LQHELDHLNG KLFVDYLSPL KRQRIKQKLE KAARLEAKQG
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