| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0031 |
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| Symbol | |
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| ID | 5610103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 36602 |
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| End bp | 38044 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640930854 |
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| Product | TrkH family potassium uptake protein |
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| Protein accession | YP_001471772 |
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| Protein GI | 157373172 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0168] Trk-type K+ transport systems, membrane components |
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| TIGRFAM ID | [TIGR00933] potassium uptake protein, TrkH family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.979757 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0679192 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAATC TTCGACCTCT GCTGTTTATT TTGGGCATAT TTCTGTCGAC GCTGACAGTA
TTTATGTTCG TCCCGCTTTT CTTTGCCCTG TTTTATGGCG AAGAAACGGT GGGCGCATTT
ATGATCGCCT CTCTGCTCAC TGGTACATGT GCCAGCGCCT GCATGCATCA GGGACGAGGT
CATCAACTTC ACCTGAACAT CCGTGATATG TTTCTGTTGA CCAGCTTAAC CTGGTTAATC
GTTAGCTTTT TTGCCGCAAT GCCATTCACC CTCTATCACG GCATTAATTA TACCGACGCA
TTTTTTGAAA CCATGTCCGG CATAACGACA ACCGGCTCGA CCGTCTTGTC AGGTCTGGAC
AAGATGGATC ACAGCATATT GATCTGGCGC TCTCTACTCC AATGGATGGG CGGCATAGGT
TTTATAGTGA TGGCCGTTGC GGTACTTCCC TTCCTCAATG TCGGTGGTAT GAGACTGTTC
AGAACCGAGT CATCCGACTG GAGTGATAAG GCCATCCCCC GCACTCAAGA TATGGCTAAG
CATCTTTTCT ATATCTACAT ATTCTTGACT ATTTGCTGTG GCCTCGCCTA CCACTGGGCA
GGCATGAGCT GGTTTGAAGC GATCAATCAC TCGATGACAA CACTGTCGAC CGGGGGCTAC
TCTACCTCTG ACAGCTCTAT GGCTGCCTTT TCCAATCAGG CGCACTGGGT AGGCACTCTC
TTTATGGCTG CCGGAGGCTT GCCACTATTA ATATTCGTCA ACTGTATACA GCATCGATCT
CTGTGGGTTT GGAATGACGC CCAGGTTAAA GGGTTTCTGT TGTTTTTATC GACTGTATCT
ATCGGCCTGG CCTTCTGGTT ATGGCTGGGT CATGAGATGA CGCCAATCGA TGCACTACGC
CTTGCCAGCT TTAATGTCGT ATCCGTGGTA ACGACTACGG GTTATGGCCT CACCGATTAC
ACTGCCTGGG GGGCATTAGC CAATGTCGCC TTCCTGTTTT TGATGTTTGT AGGCAGTTGT
TCTGGCTCTA CATCCGGCGG CATCAAAATT TTCCGCTTCC AGATAGCCAT TGCGATTATG
CGGGAGCAAC TCAAGCAGCA GTTCCACCCC AATGGCGTGT TTAAAGAAAG GTATAACAAC
AGGGTTATAA GTGAAGATAT TGTCCGCTCG CTGGTAACCT TCGTTCTTCT ATTTATGCTG
GTTATCGTCG TACTGTCCAT TATTCTGGTG ATGACCGGAC TCGATCCCAC CACCAGTTTT
ACCGGCGCAG TAACAGCAGT GACAAATGTT GGTCCCGGGC TTGGGCATAC TATCGGGCCG
GCGGGTAACT TCTCGACCCT ACCCGATGTC GCCAAATGGG CACTGGCAAT CGGCATGCTA
TTGGGTCGAT TGGAGATCCT GACGGTTGCG GTGTTGTTTC ACCCAGGCTT TTGGAAATAC
TAG
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| Protein sequence | MLNLRPLLFI LGIFLSTLTV FMFVPLFFAL FYGEETVGAF MIASLLTGTC ASACMHQGRG
HQLHLNIRDM FLLTSLTWLI VSFFAAMPFT LYHGINYTDA FFETMSGITT TGSTVLSGLD
KMDHSILIWR SLLQWMGGIG FIVMAVAVLP FLNVGGMRLF RTESSDWSDK AIPRTQDMAK
HLFYIYIFLT ICCGLAYHWA GMSWFEAINH SMTTLSTGGY STSDSSMAAF SNQAHWVGTL
FMAAGGLPLL IFVNCIQHRS LWVWNDAQVK GFLLFLSTVS IGLAFWLWLG HEMTPIDALR
LASFNVVSVV TTTGYGLTDY TAWGALANVA FLFLMFVGSC SGSTSGGIKI FRFQIAIAIM
REQLKQQFHP NGVFKERYNN RVISEDIVRS LVTFVLLFML VIVVLSIILV MTGLDPTTSF
TGAVTAVTNV GPGLGHTIGP AGNFSTLPDV AKWALAIGML LGRLEILTVA VLFHPGFWKY
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