Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0025 |
Symbol | |
ID | 5612759 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 31167 |
End bp | 31781 |
Gene Length | 615 bp |
Protein Length | 204 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640930848 |
Product | hypothetical protein |
Protein accession | YP_001471766 |
Protein GI | 157373166 |
COG category | [S] Function unknown |
COG ID | [COG1739] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR00257] uncharacterized protein, YigZ family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.224364 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.033343 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGACCGATA GTTATCAGGT TCCATCGGCT GAGCTGGTGA TTGAGGAGGA GATTAAGCAT AGCCGCTTCA TATCTGTTTT ATTCCATTGT CAGTCTTACG AAGAACTGAA GTGTGTACTT ACTAACGTGA AGGCTGATTA TCCAGGGGCC AGCCATTATT GCTATGCATT TGTCGCTGCG GAACCACAAA ATAGTATTGC TATAGGCTCA AGTGACGACG GAGAGCCTGC CGGAAGTGCC GGACGCCCTA TGCTGGCGAC GCTACAGGGG GCCAATGTTG GAGAGATCGG CGCCATTGTC GTACGTTATT TCGGTGGCAC AAAATTGGGT GTTGGTGGAC TCGTCAGGGC CTACAGCTCA GGAATTAAAC AAGGGCTCAC TCAACTGCAG ACTGAGTTGA AGCAGATTAG ATATCCCGGC TCCTTGGTGT GTGAGTATAG CCAGCTAAAA GATGTTGAGT ATCTATTGAA TCAATATGAT GCAGTTGTCG AAGATAGATC TTTTGCAGAA AAGGTGACAC TTGAGTTTGA GATCCCAAAG CGTTATCAAG AGACGTTGAA TCTCGGTTTG GCTACGATGA GTCAGGGGAT GTTGTCGGCA AAGTTTAAGA GTTAG
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Protein sequence | MTDSYQVPSA ELVIEEEIKH SRFISVLFHC QSYEELKCVL TNVKADYPGA SHYCYAFVAA EPQNSIAIGS SDDGEPAGSA GRPMLATLQG ANVGEIGAIV VRYFGGTKLG VGGLVRAYSS GIKQGLTQLQ TELKQIRYPG SLVCEYSQLK DVEYLLNQYD AVVEDRSFAE KVTLEFEIPK RYQETLNLGL ATMSQGMLSA KFKS
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