Gene Ssed_0025 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0025 
Symbol 
ID5612759 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp31167 
End bp31781 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content47% 
IMG OID640930848 
Producthypothetical protein 
Protein accessionYP_001471766 
Protein GI157373166 
COG category[S] Function unknown 
COG ID[COG1739] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00257] uncharacterized protein, YigZ family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.224364 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.033343 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACCGATA GTTATCAGGT TCCATCGGCT GAGCTGGTGA TTGAGGAGGA GATTAAGCAT 
AGCCGCTTCA TATCTGTTTT ATTCCATTGT CAGTCTTACG AAGAACTGAA GTGTGTACTT
ACTAACGTGA AGGCTGATTA TCCAGGGGCC AGCCATTATT GCTATGCATT TGTCGCTGCG
GAACCACAAA ATAGTATTGC TATAGGCTCA AGTGACGACG GAGAGCCTGC CGGAAGTGCC
GGACGCCCTA TGCTGGCGAC GCTACAGGGG GCCAATGTTG GAGAGATCGG CGCCATTGTC
GTACGTTATT TCGGTGGCAC AAAATTGGGT GTTGGTGGAC TCGTCAGGGC CTACAGCTCA
GGAATTAAAC AAGGGCTCAC TCAACTGCAG ACTGAGTTGA AGCAGATTAG ATATCCCGGC
TCCTTGGTGT GTGAGTATAG CCAGCTAAAA GATGTTGAGT ATCTATTGAA TCAATATGAT
GCAGTTGTCG AAGATAGATC TTTTGCAGAA AAGGTGACAC TTGAGTTTGA GATCCCAAAG
CGTTATCAAG AGACGTTGAA TCTCGGTTTG GCTACGATGA GTCAGGGGAT GTTGTCGGCA
AAGTTTAAGA GTTAG
 
Protein sequence
MTDSYQVPSA ELVIEEEIKH SRFISVLFHC QSYEELKCVL TNVKADYPGA SHYCYAFVAA 
EPQNSIAIGS SDDGEPAGSA GRPMLATLQG ANVGEIGAIV VRYFGGTKLG VGGLVRAYSS
GIKQGLTQLQ TELKQIRYPG SLVCEYSQLK DVEYLLNQYD AVVEDRSFAE KVTLEFEIPK
RYQETLNLGL ATMSQGMLSA KFKS