| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0024 |
|---|
| Symbol | |
|---|
| ID | 5612758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 29795 |
|---|
| End bp | 31114 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640930847 |
|---|
| Product | proline dipeptidase |
|---|
| Protein accession | YP_001471765 |
|---|
| Protein GI | 157373165 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0006] Xaa-Pro aminopeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.840072 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0225878 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCAGC TAACTAATCA TTTTCATGCT CATGTGGCAG AGTTAAACCG TAGGGTTGCA
GAGATTGTTG CTCGTGAAAA CTTATCTGGT CTGGTGATCC ATTCGGGACA GCCTCATCGA
CAGTTTCTCG ATGATATGGA TTATCCGTTT AAAGTGAACC CTCACTTTAA AGCCTGGCTG
CCGATCTTAG ATAACCCACA CTGTTGGTTA TTAGTTAACG GGCGCGATAA ACCTCAACTT
ATCTTCTATC GTCCAGTCGA CTTCTGGCAT AAGGTTGCCG ACCTTCCTGA TGAATTCTGG
ACTGCTCATG TCGATATTAA GTTACTGACC AAAGCGGATA AAGTTGCAGA CCTACTGCCA
AAAGATATTG TTGATTGGGC TTATGTCGGT GAGCACTTGG ATGTGGCTGA GGTGCTTGGT
TTTAAGACCC GTAACCCAGA CGCCGTTATG AGTTACCTGC ATTACCATCG CGCGACAAAG
ACTGAATATG AATTAGCCTG TATGCGCAAG TCCAATGAGA TTGCGGTAAA GGGGCATGTC
GCGGCCAAGA ATGCTTTCTA TAATGGTGGG TCAGAGTTTG AGATCCAGCA GCAATACTTG
ATGGCTACGA ATCAAGGGGA AAACGAGGTG CCTTACGGCA ATATTATCGC GCTGAACCGG
AATGCGTCGA TACTGCATTA CACCAAGTTG GAGAATCAAT CTCCGCAGCC CCGCCGTTCC
TTCCTAATCG ATGCCGGTGC AAACTTTTTT GGCTATGCGT CGGATATCAC CAGAACCTAT
GCGTTTGAAA AGAATATCTT CAGTGAGTTA ATTGAGGCTA TGGACAGGGC ACAGCTTGAG
ATTATCGATA CGATGCGTCC CGGTGTTAAA TATGTGGATC TTCACCTTGC GACTCACCAA
AAGGTGGCTC AAATGCTTAT CGATTTCGAC TTGGCTACCG GAGATCGTGA AGGCCTGATA
GAGCAGGGGA TCACCAGTGT CTTCTTCCCC CATGGATTAG GCCATATGTT GGGTTTACAG
GTTCATGATA TGGGTGGCTT CCTTCATGAC GAGCGTGGGA CACATATTGC AGCACCCGAT
GCGCATCCAT TTTTGCGTTG TACGCGTACA CTCGCCGCGA ATCAAGTGCT GACTATCGAA
CCGGGTTTGT ACATTATCGA CTCTCTTCTG CAGGGACTTA AACAAGATAA CCGCCAACAT
CAGGTGAACT GGAACAGTGT AGACTTGTTG CGTCCATTTG GTGGTATCCG CATCGAAGAT
AATGTCATAG TGCACAGTGA TAAAAATGAA AATATGACTC GGGATTTAGG TTTAGATTAA
|
|---|
| Protein sequence | MDQLTNHFHA HVAELNRRVA EIVARENLSG LVIHSGQPHR QFLDDMDYPF KVNPHFKAWL
PILDNPHCWL LVNGRDKPQL IFYRPVDFWH KVADLPDEFW TAHVDIKLLT KADKVADLLP
KDIVDWAYVG EHLDVAEVLG FKTRNPDAVM SYLHYHRATK TEYELACMRK SNEIAVKGHV
AAKNAFYNGG SEFEIQQQYL MATNQGENEV PYGNIIALNR NASILHYTKL ENQSPQPRRS
FLIDAGANFF GYASDITRTY AFEKNIFSEL IEAMDRAQLE IIDTMRPGVK YVDLHLATHQ
KVAQMLIDFD LATGDREGLI EQGITSVFFP HGLGHMLGLQ VHDMGGFLHD ERGTHIAAPD
AHPFLRCTRT LAANQVLTIE PGLYIIDSLL QGLKQDNRQH QVNWNSVDLL RPFGGIRIED
NVIVHSDKNE NMTRDLGLD
|
|---|
| |