Gene Ssed_0020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0020 
Symbol 
ID5612852 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp24870 
End bp25115 
Gene Length246 bp 
Protein Length81 aa 
Translation table11 
GC content50% 
IMG OID640930843 
Productsulfur transfer protein SirA 
Protein accessionYP_001471761 
Protein GI157373161 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0425] Predicted redox protein, regulator of disulfide bond formation 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000878962 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCGACC CATTTTCAGA AGCACAACAC CAACTCGATG CTCTCGGACT CAGGTGCCCG 
GAGCCGGTCA TGATGGTTCG TAAATCAGTA CGCAAGATGG CTCAGGGTGA AACACTATTG
ATCATCGCCG ATGATCCGGC CACGACTCGT GATATTCCCA GCTTCTGTGA ATTTATGGAC
CATAAACTGC TGGCCAGCCA AACAGACTCG ACGCCCTACC AATACCTTAT TCAGAAAGGC
TTATAA
 
Protein sequence
MSDPFSEAQH QLDALGLRCP EPVMMVRKSV RKMAQGETLL IIADDPATTR DIPSFCEFMD 
HKLLASQTDS TPYQYLIQKG L