| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0018 |
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| Symbol | |
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| ID | 5609691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 20933 |
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| End bp | 24178 |
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| Gene Length | 3246 bp |
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| Protein Length | 1081 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640930841 |
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| Product | amidohydrolase |
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| Protein accession | YP_001471759 |
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| Protein GI | 157373159 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1228] Imidazolonepropionase and related amidohydrolases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000272228 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTAAAAC ATAAGCTCAC CCCACTATGT GCAGCCATAG CACTCAGCTT TACCCCACCT
ATTTTTGCAG AAGAAACCCT ATCAGAAAAA GAGCCAGCCT GGCAGGTAAA CGCTCCCGCA
AATGCACCAC TTGAAAAAGT GAGTATCGAT GTCACCGAAG GCACCTGGAT GAATGTTAGT
GTCAGTCCCA ATGGCAAACA TATCGTGTTC GATATGTTAG GTGATATCTA TCAGATCCCG
ATGAAAGGTG GCGAAGCGAA AGTACTGGCC AAGGGGATAG CCTGGCAGAT GCAGCCCGTC
TACAGTCCGG ACGGTAAATA CATAGCTTTC ACCTCAGATG AGGATGGTGG CGATAACATT
TGGGTCATGG AAGCCGATGG AAGCAACCCC AGAGCGGTAA CCGAAGAGAC ATTCCGCCTA
CTCAATAGCC CAGCCTGGAG TCCGGATTCT CAATACCTGG TTGCCCGTAA GCACTTTACC
GGCTCTCGCA GTTTAGGCGC CGGTGAAGTC TGGATGTACC ATGTCGCTGG CGGCGAGGGA
GTTAAGTTAA CCAAGCGTCC AAACGAACAG AAAGATCTCG GTGAACCAGC CTACTCACCC
GATGGCCGTT ATATCTACTT CAGTCAGGAT GCGACACCGG GTAAAACTTT TCATTACTCC
AAAGACTCGG TGAAAGGGAT CTATAAGATT AAACGTTATG ACACTCAAAC TGGTGACATC
GAAGTATTAA TCGAAGGCAC AGGTGGCGCG ATACGCCCAA CGCCTAGTCC AGACGGTAAG
AAGCTTGCTT ACATAAAGCG AGACGGATTT CAGTCATCGC TCTATATGCT GGATCTCAGG
TCCGGAGAAA CAGAGAAACT CTACGGCAAG TTAGACAGAG ATATGCAGGA AACCTGGGCC
ATCCATGGCG TCTACCCGAC CATGAGTTGG ACCGGTGATA ATGAAGAGAT CGTCTTCTGG
GCCGGCGGAA AGATTAATAA GCTCGATGTC GAATCAAAGT CTGTCAAGCA GATCCCCTTC
TCAATTAAGA CCCAGCTCGA CGTCCAACCC GCCGTTCGTT TTACACAAGA TCTGGACAAG
GATAAGTTCG ACGTGAAGAT GCTGCGTATG GCACAGGTAT CTCCCGACGG TAAGAAGGTC
GTCTATGAAG CACTGGGCAA GCTATGGGTT AAGTCCCTAT CTGATGGAAA GTCCGATGGC
AAACGCACCC GATTAACTAA ACTGGATTCA GAGCTTAGAG AGTTATTTCC TCAGTGGTCT
CGTGACGGTA AGAGTATCGT ATTCACCACC TGGGATGATC TGGAGCAAGG CAGCGTTCGC
GTCGTCAGCC TAAGAAATAA GAGAGTGAAA ACCTTAACTA AGGAACCGGG AAAATACGTA
GAACCCACCT TCTCTCCCGA TGGATCATTC GTGGTTTACC GTAAAGCCAA GGGTGGATAT
ATCACGCCAA GGAGCTGGTC TCAGGAGACT GGACTGTACA GGGTAGATAC TAAAGGCAAG
GAGAACATTA AGATCACTCC CGACGGCTAC CAGCCACAAT TTGGTGCCGA ATCGGACCGA
GTCTACTTTA TGGATCACGG TGAAACACCT GAATTAGCCT CGATAAATTT GGATGGCTTT
CAGAAGCGCG TGCATTACAC GAGTAAGCAT GCAACAGAAT TCCGCGTCTC TCCCGATGGC
AAACAACTTG CCTTCGCAGA GCGCTTCAAG GTATGGGTTA CCCCTTTTGC TAAACATGGC
GAAACCATAG AGATAGGCCC GAAAGCCAAT AACCTTCCGG TCACTCAGCT TAGCGTTCGC
GCCGGTGAGA GCATCAGCTG GAACAATGAC AGCGATCAAC TCTACTGGAC CTTGGGCCCG
GAGCTCTATC AAGTCGAAGT CGATACGGCC TATGCAGCCA AGGATAAGAC AGCTGACGAT
AAACAAGCTA AAGCCATCGA GCCACAAATA ACCGACATCG GATTCTCGCA AAATGTCGAT
GTTCCACGTG GAACAGTCGC TTTCGTTGGC GGTAAAGTTA TCACGATGGA AGATGATAAG
GTGATTGAAA ACGGCATTGT CATAGTCAAA AACAACCACA TAGTTGCGGT TGGTGGGGCC
GATACAGAGG TGCCAGATGA TGCTCAGGTG ATCGACATCA AGGGCAAGAC AATAATGCCA
GGTCTTTTCG ATGCACACGC TCACGGTTCA CAGGGTGAAG ATGAGATTAT CCCGCAACAA
AACTGGGAGC TATACTCTAA CCTGTCTCTG GGTGTGACCA CGATTCATGA TCCATCCAAT
GACACCACGG AGATTTTTGC CGCTTCGGAG CAACAGAAAG CGGGTAACAT CGCCGGTCCT
CGCATCTTCT CAACGGGTAC GATTTTGTAT GGTGCCAATG GACCGGGTTA CACCTCCCAT
ATAGATTCAC TGGATGATGC AAAGTTTCAT CTGGAACGCC TCAAGAAAGT TGGCGCCTTC
AGTGTGAAGA GCTATAACCA GCCCCGTCGA AATCAGCGAC AGCAAGTCAT TGCTGCTGCG
CGTGAACTCG AGATGATGGT GGTTCCGGAA GGCGGAAGTC TGCTGCAACA TAACCTGACG
ATGATTGCCG ATGGACATAC AGGTATCGAG CACTCCCTAC CTGCGGCATC TATCTATAAT
GACATCAAGC AGTTCTGGAG CCAGACCAAG GTTGGTTATA CACCTACTCT GGTTGTCGCC
TATGGTGGAA TTTCGGGTGA GAACTACTGG TATGACAAAA CCGATGTCTG GGCTCACCCG
AGACTCTCCA TGTATGTACC GGGTGATCTG CTACAAGCCC GTTCGATGCG ACGCCCTACT
GCACCGGATG AACACTATAA CCATTTCAAC GTTGCACGCG TGGCCAATGA GATGAACGAC
CTTGGTGTTA AACCCAATAT TGGTGCCCAT GGTCAGCGTG AAGGTTTAGC CGCTCATTGG
GAGATGTGGA TGTTTGCCCA AGGCGGAATG AGTAACCTCG AGGTATTAAA AACCGCGACC
ATCAATCCGG CGAAACATTT CGCCATGGAT CATCAAATCG GTTCTATCGA GCAAGGTAAG
CTTGCCGACC TGATTGTCAT CGATGGTGAC CCGCTGGAAG ATATTCGCAT CACCGATCGT
GTTACCTATA CTATGGTCAA CGGCAAACTC TACAATGCCG AAACCATGAA TCAGCTCAAT
GGTGGATCCA AAAACAGAGG AAAAGAGAGA AAACCGTTCT TTTTTGAAAA TCGCACCAAT
GACTAA
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| Protein sequence | MLKHKLTPLC AAIALSFTPP IFAEETLSEK EPAWQVNAPA NAPLEKVSID VTEGTWMNVS
VSPNGKHIVF DMLGDIYQIP MKGGEAKVLA KGIAWQMQPV YSPDGKYIAF TSDEDGGDNI
WVMEADGSNP RAVTEETFRL LNSPAWSPDS QYLVARKHFT GSRSLGAGEV WMYHVAGGEG
VKLTKRPNEQ KDLGEPAYSP DGRYIYFSQD ATPGKTFHYS KDSVKGIYKI KRYDTQTGDI
EVLIEGTGGA IRPTPSPDGK KLAYIKRDGF QSSLYMLDLR SGETEKLYGK LDRDMQETWA
IHGVYPTMSW TGDNEEIVFW AGGKINKLDV ESKSVKQIPF SIKTQLDVQP AVRFTQDLDK
DKFDVKMLRM AQVSPDGKKV VYEALGKLWV KSLSDGKSDG KRTRLTKLDS ELRELFPQWS
RDGKSIVFTT WDDLEQGSVR VVSLRNKRVK TLTKEPGKYV EPTFSPDGSF VVYRKAKGGY
ITPRSWSQET GLYRVDTKGK ENIKITPDGY QPQFGAESDR VYFMDHGETP ELASINLDGF
QKRVHYTSKH ATEFRVSPDG KQLAFAERFK VWVTPFAKHG ETIEIGPKAN NLPVTQLSVR
AGESISWNND SDQLYWTLGP ELYQVEVDTA YAAKDKTADD KQAKAIEPQI TDIGFSQNVD
VPRGTVAFVG GKVITMEDDK VIENGIVIVK NNHIVAVGGA DTEVPDDAQV IDIKGKTIMP
GLFDAHAHGS QGEDEIIPQQ NWELYSNLSL GVTTIHDPSN DTTEIFAASE QQKAGNIAGP
RIFSTGTILY GANGPGYTSH IDSLDDAKFH LERLKKVGAF SVKSYNQPRR NQRQQVIAAA
RELEMMVVPE GGSLLQHNLT MIADGHTGIE HSLPAASIYN DIKQFWSQTK VGYTPTLVVA
YGGISGENYW YDKTDVWAHP RLSMYVPGDL LQARSMRRPT APDEHYNHFN VARVANEMND
LGVKPNIGAH GQREGLAAHW EMWMFAQGGM SNLEVLKTAT INPAKHFAMD HQIGSIEQGK
LADLIVIDGD PLEDIRITDR VTYTMVNGKL YNAETMNQLN GGSKNRGKER KPFFFENRTN
D
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